Pre_GI: BLASTP Hits

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Query: NC_004578:3193490:3229288 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3229288, End: 3232422, Length: 3135

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:478586:5060275060275090293003Pectobacterium wasabiae WPP163, complete genomevirulence protein SrfB0840
NC_016835:405482:4214314214314244032973Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,hypothetical protein0766
NC_010694:1932126:1934522193452219375062985Erwinia tasmaniensis, complete genomePutative virulence effector protein0723
NC_012214:2019000:2042501204250120454912991Erwinia pyrifoliae Ep1/96, complete genomeVirulence protein SrfB0721
NC_011757:2030631:2033242203324220363703129Methylobacterium chloromethanicum CM4, complete genomevirulence protein SrfB1e-132474