Pre_GI: BLASTP Hits

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Query: NC_004578:2671508:2691134 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2691134, End: 2692657, Length: 1524

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015594:1210736:1232515123251512340321518Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeL-amino-acid oxidase2e-85317
NC_015064:3370840:3380245338024533818731629Acidobacterium sp. MP5ACTX9 chromosome, complete genomeL-amino-acid oxidase2e-83310
NC_016147:513819:5380535380535396391587Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeflavin monoamine oxidase-like protein5e-59229
NC_009956:88354:1110911110911127161626Dinoroseobacter shibae DFL 12 plasmid pDSHI02, complete sequenceL-amino-acid oxidase2e-55216
NC_018664:159291:1629791629791646041626Clostridium acidurici 9a chromosome, complete genomeamine oxidase2e-25117
NC_004193:1335626:1336825133682513382821458Oceanobacillus iheyensis HTE831, complete genomeL-amino acid oxidase1e-1688.2
NC_010674:2417199:2418257241825724199751719Clostridium botulinum B str. Eklund 17B, complete genomeputative flavin containing amine oxidoreductase2e-0964.3