Pre_GI: BLASTP Hits

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Query: NC_004578:2560473:2560473 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2560473, End: 2561996, Length: 1524

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010322:1817598:1817598181759818199882391Pseudomonas putida GB-1 chromosome, complete genomePAS/PAC sensor-containing diguanylate cyclase9e-58224
NC_007626:1091000:1105968110596811082922325Magnetospirillum magneticum AMB-1, complete genomeSignal transduction histidine kinase2e-1997.4
NC_012880:3645304:3661255366125536653794125Dickeya dadantii Ech703, complete genomemulti-sensor hybrid histidine kinase9e-0858.9
NC_009483:3173464:3183932318393231867212790Geobacter uraniireducens Rf4 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase2e-0757.8
NC_010676:3009980:3040903304090330440163114Burkholderia phytofirmans PsJN chromosome 2, complete sequencediguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s)4e-0756.6
NC_007643:2722265:2748141274814127528234683Rhodospirillum rubrum ATCC 11170, complete genomeMulti-sensor Hybrid Histidine Kinase8e-0755.8
NC_014844:3469848:3485824348582434885982775Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomePAS sensor protein2e-0654.3