Pre_GI: BLASTP Hits

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Query: NC_004578:2185907:2207025 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2207025, End: 2207279, Length: 255

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009778:4188000:422846642284664228711246Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-1684
NC_018080:4436646:445771644577164457967252Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein3e-1477
NC_002516:1031386:109060610906061090857252Pseudomonas aeruginosa PAO1, complete genomehypothetical protein3e-1477
NC_010501:4379920:440020744002074400446240Pseudomonas putida W619, complete genomeSirA family protein3e-1270.5
NC_018868:1271742:129391712939171294177261Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeRhodanese-like domain-containing protein1e-1168.2
NC_007005:1738500:173854917385491738800252Pseudomonas syringae pv. syringae B728a, complete genomeSirA-like4e-1166.6
NC_012660:1579204:161854216185421618781240Pseudomonas fluorescens SBW25 chromosome, complete genomeputative SirA-like protein3e-1063.9
NC_014972:3771642:377957837795783779835258Desulfobulbus propionicus DSM 2032 chromosome, complete genomeSirA-like domain-containing protein1e-0962
NC_015557:981698:997689997689997922234Hydrogenobaculum sp. 3684 chromosome, complete genomeSirA-like domain-containing protein6e-0959.7
NC_015587:981808:997800997800998033234Hydrogenobaculum sp. SHO chromosome, complete genomeSirA-like domain-containing protein6e-0959.7
NC_020411:981888:997880997880998113234Hydrogenobaculum sp. HO, complete genomeSirA-like domain-containing protein6e-0959.7
NC_008576:4701930:470389547038954704119225Magnetococcus sp. MC-1, complete genomeSirA family protein1e-0858.9
NC_003295:856775:856775856775857002228Ralstonia solanacearum GMI1000, complete genomehypothetical protein9e-0958.9
NC_015588:1965787:198151619815161981788273Isoptericola variabilis 225 chromosome, complete genomeSirA-like domain-containing protein1e-0858.2
NC_007644:416000:437795437795438022228Moorella thermoacetica ATCC 39073, complete genomeSirA-like1e-0858.2
NC_014733:107394:112396112396112644249Methylovorus sp. MP688 chromosome, complete genomesira family protein2e-0857.8
NC_011126:992994:100897810089781009211234Hydrogenobaculum sp. Y04AAS1, complete genomeSirA family protein2e-0857.8
NC_015677:3339181:335607833560783356305228Ramlibacter tataouinensis TTB310 chromosome, complete genomehypothetical protein3e-0857.4
NC_009428:725871:728535728535728843309Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomeSirA family protein3e-0857.4
NC_020304:1222000:122670912267091226966258Desulfocapsa sulfexigens DSM 10523, complete genomeputative redox protein, regulator of disulfide bond formation4e-0857
NC_009635:985935:989413989413989631219Methanococcus aeolicus Nankai-3 chromosome, complete genomeSirA family protein1e-0755.5
NC_006274:765870:778674778674778904231Bacillus cereus E33L, complete genomehypothetical protein1e-0755.5
NC_017208:823540:833804833804834364561Bacillus thuringiensis serovar chinensis CT-43 chromosome, completemolybdopterin biosynthesis MoeB1e-0755.1
NC_014976:684000:694711694711694938228Bacillus subtilis BSn5 chromosome, complete genomehypothetical protein1e-0755.1
NC_014614:656000:6767836767836792662484Clostridium sticklandii, complete genomeFAD-dependent pyridine nucleotide-disulphide oxidoreductase precursor2e-0754.7
NC_008781:3365468:336845633684563368689234Polaromonas naphthalenivorans CJ2, complete genomeSirA family protein2e-0754.3
NC_020210:2133996:213603621360362136605570Geobacillus sp. GHH01, complete genomeUPF0033 family protein2e-0754.3
NC_011985:3380842:338213933821393382372234Agrobacterium radiobacter K84 chromosome 1, complete genomehypothetical protein2e-0754.3
NC_014976:684000:696441696441696995555Bacillus subtilis BSn5 chromosome, complete genomeputative rhodanese-related sulfur transferase3e-0753.9
NC_019896:1483073:151347915134791514036558Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein3e-0753.9
NC_021171:4425050:444325244432524443830579Bacillus sp. 1NLA3E, complete genomeSirA family protein4e-0753.5
NC_000964:2702376:271180327118032712360558Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein3e-0753.5
NC_013411:2951559:295274629527462953315570Geobacillus sp. Y412MC61, complete genomeSirA family protein5e-0753.1
NC_014915:2092678:209267820926782093247570Geobacillus sp. Y412MC52 chromosome, complete genomeSirA-like domain-containing protein5e-0753.1
NC_006510:2110430:211043021104302110999570Geobacillus kaustophilus HTA426, complete genomehypothetical protein5e-0753.1
NC_009328:2083386:210212321021232102389267Geobacillus thermodenitrificans NG80-2 chromosome, complete genomemolybdopterin biosynthesis MoeB-like protein6e-0753.1
NC_019940:2893535:291481729148172915047231Thioflavicoccus mobilis 8321 chromosome, complete genomeredox protein, regulator of disulfide bond formation6e-0752.8
NC_020272:3396800:342882434288243429051228Bacillus amyloliquefaciens IT-45, complete genomeSirA-like protein6e-0752.8
NC_015151:2285175:229588122958812296165285Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeSirA family protein8e-0752.4
NC_017208:823540:835562835562835792231Bacillus thuringiensis serovar chinensis CT-43 chromosome, completemolybdopterin biosynthesis MoeB8e-0752.4
NC_019842:484933:520453520453520680228Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein9e-0752.4
NC_009725:496443:526445526445526672228Bacillus amyloliquefaciens FZB42, complete genomeYrkI9e-0752.4
NC_019896:1483073:151547615154761515703228Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein9e-0752.4
NC_013411:2951559:295456529545652954792228Geobacillus sp. Y412MC61, complete genomeSirA family protein1e-0652
NC_014915:2092678:209449720944972094724228Geobacillus sp. Y412MC52 chromosome, complete genomeSirA-like domain-containing protein1e-0652
NC_000964:2702376:271007427100742710301228Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein1e-0652
NC_007644:1638083:166245816624581662685228Moorella thermoacetica ATCC 39073, complete genomeSirA-like1e-0651.6
NC_014210:3763940:377025137702513770499249Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,SirA family protein1e-0651.6
NC_008340:362000:376136376136376378243Alkalilimnicola ehrlichei MLHE-1, complete genomeSirA family protein2e-0650.8