Pre_GI: BLASTP Hits

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Query: NC_004578:20738:31338 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 31338, End: 31967, Length: 630

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009434:3611738:368941536894153690047633Pseudomonas stutzeri A1501, complete genomeHAD superfamily hydrolase1e-45182
NC_020829:4429435:444847544484754449101627Pseudomonas denitrificans ATCC 13867, complete genomeHAD superfamily hydrolase2e-41168
NC_009659:892272:906748906748907377630Janthinobacterium sp. Marseille chromosome, complete genomeHAD superfamily hydrolase6e-29127
NC_007651:1620000:163661016366101637209600Burkholderia thailandensis E264 chromosome I, complete sequencehydrolase of HAD-superfamily1e-2099.4
NC_018868:619113:656949656949657608660Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeHAD superfamily hydrolase2e-1789
NC_008554:956003:982210982210982905696Syntrophobacter fumaroxidans MPOB, complete genomeHAD-superfamily hydrolase, subfamily IA, variant 32e-0755.5
NC_019673:7951493:795430679543067955043738Saccharothrix espanaensis DSM 44229 complete genomeHAD-superfamily hydrolase, subfamily IA, variant 12e-0652.4
NC_014210:2372813:237500823750082375742735Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,HAD-superfamily hydrolase, subfamily IA, variant 16e-0650.8