Pre_GI: BLASTP Hits

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Query: NC_004547:611178:611178 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 611178, End: 612215, Length: 1038

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012214:3502992:3511151351115135122601110Erwinia pyrifoliae Ep1/96, complete genometype IV pilus integral membrane protein1e-28127
NC_009708:4182460:4204699420469942057991101Yersinia pseudotuberculosis IP 31758 chromosome, complete genometype IV pilus biogenesis protein PilR4e-28125
NC_005126:1223042:1234512123451212355971086Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-25117
NC_004129:5373886:5406087540608754072531167Pseudomonas fluorescens Pf-5, complete genomeintegral membrane protein, putative1e-20100
NC_005126:2063667:2077196207719620782931098Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-1997.4
NC_007950:185500:1985251985251995981074Polaromonas sp. JS666 plasmid 2, complete sequencetype II secretion system protein1e-1894
NC_018080:5091772:5128705512870551297841080Pseudomonas aeruginosa DK2 chromosome, complete genometype IV B pilus protein2e-1893.6
NC_009656:4527457:4609300460930046103791080Pseudomonas aeruginosa PA7 chromosome, complete genometype IV B pilus protein3e-1892.8
NC_008463:5246954:5283717528371752847961080Pseudomonas aeruginosa UCBPP-PA14, complete genometype IV B pilus Protein5e-1892
NC_015850:1155376:1179517117951711806171101Acidithiobacillus caldus SM-1 chromosome, complete genomeintegral membrane protein1e-1687.4
NC_007507:11000:1735117351184481098Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative PilR-like integral membrane protein7e-1375.1
NC_010682:1624985:1630239163023916313121074Ralstonia pickettii 12J chromosome 1, complete sequencetype II secretion system protein1e-1273.9
NC_012751:942315:9459009459009469641065Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completePilR type IV pilus biosynthesis protein2e-1273.6
NC_020063:528296:5427715427715438051035Enterobacteriaceae bacterium strain FGI 57, complete genometype II secretory pathway, component PulF2e-0653.9