Pre_GI: BLASTP Hits

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Query: NC_004547:442927:481914 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 481914, End: 483335, Length: 1422

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015947:1290614:1310572131057213119721401Burkholderia sp. JV3 chromosome, complete genomeouter membrane efflux protein1e-43177
NC_010943:1426885:1454493145449314558661374Stenotrophomonas maltophilia K279a, complete genomeouter membrane efflux protein2e-43177
NC_016776:2913966:2926864292686429283271464Bacteroides fragilis 638R, complete genomeputative outer membrane protein4e-40166
NC_003228:2929006:2941884294188429433471464Bacteroides fragilis NCTC 9343, complete genomeputative outer membrane protein4e-40166
NC_006347:2861498:2868241286824128697341494Bacteroides fragilis YCH46, complete genomehypothetical protein2e-39163
NC_014734:1049273:1067581106758110690921512Paludibacter propionicigenes WB4 chromosome, complete genomeouter membrane efflux protein2e-1273.9
NC_012440:1405879:1417316141731614186891374Persephonella marina EX-H1, complete genomeouter membrane efflux protein4e-1273.2
NC_015185:485866:4858664858664871911326Desulfurobacterium thermolithotrophum DSM 11699 chromosome,outer membrane efflux protein1e-0965.1
NC_014926:819163:8191638191638204521290Thermovibrio ammonificans HB-1 chromosome, complete genomeouter membrane efflux protein2e-0964.7
NC_010814:190673:2064722064722077311260Geobacter lovleyi SZ, complete genomeouter membrane efflux protein3e-0963.5
NC_009254:637952:6384836384836399581476Burkholderia vietnamiensis G4 chromosome 3, complete sequenceFis family transcriptional regulator1e-0758.2
NC_011296:102650:1189331189331202491317Thermodesulfovibrio yellowstonii DSM 11347, complete genomeouter membrane efflux protein1e-0758.2
NC_011027:1427343:1427343142734314287551413Chlorobaculum parvum NCIB 8327, complete genomeouter membrane efflux protein3e-0757
NC_015722:4539:3167631676329531278Candidatus Midichloria mitochondrii IricVA chromosome, completetype I secretion outer membrane protein9e-0755.5
NC_011979:773673:7968237968237981241302Geobacter sp. FRC-32, complete genomeouter membrane efflux protein1e-0655.1
NC_014323:5051041:5070673507067350719591287Herbaspirillum seropedicae SmR1 chromosome, complete genomecobalt-zinc-cadmium resistance cation efflux system outer membrane protein2e-0654.7