Pre_GI: BLASTP Hits

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Query: NC_004547:3207776:3239133 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 3239133, End: 3239936, Length: 804

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014973:3452100:346368534636853464350666Geobacter sp. M18 chromosome, complete genomeFRG domain-containing protein1e-29130
NC_019940:389979:396690396690397370681Thioflavicoccus mobilis 8321 chromosome, complete genomeFRG domain-containing protein2e-26119
NC_013194:2020134:203071620307162031408693Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeFRG domain protein6e-1994.7
NC_020387:796253:807292807292808086795Dehalococcoides mccartyi BTF08, complete genomeFRG domain-containing protein9e-1994
NC_009719:336000:355784355784356458675Parvibaculum lavamentivorans DS-1 chromosome, complete genomeFRG domain-containing protein2e-1479.7
NC_010334:2615260:264593626459362646739804Shewanella halifaxensis HAW-EB4, complete genomeFRG domain protein6e-1478.2
NC_013235:464049:473974473974474771798Nakamurella multipartita DSM 44233, complete genomeFRG domain protein3e-1375.9
NC_013171:1336000:135611513561151357008894Anaerococcus prevotii DSM 20548, complete genomeFRG domain protein3e-1272.4
NC_014958:843456:852559852559853314756Deinococcus maricopensis DSM 21211 chromosome, complete genomeFRG domain-containing protein8e-1270.9
NC_011001:302500:326635326635327486852Burkholderia cenocepacia J2315 chromosome 2, complete sequencehypothetical protein1e-1170.5
NC_009483:1636189:164726516472651648098834Geobacter uraniireducens Rf4 chromosome, complete genomehypothetical protein2e-1066.6
NC_016629:3789554:380086138008613801763903Desulfovibrio africanus str. Walvis Bay chromosome, completeFRG domain-containing protein2e-1066.6
NC_008061:190287:215598215598216410813Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencehypothetical protein6e-1064.7
NC_010515:2111691:213992121399212140733813Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceFRG domain protein6e-1064.7
NC_012724:1892000:190083219008321901707876Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein8e-1064.3
NC_014217:2172464:2179336217933621804721137Starkeya novella DSM 506 chromosome, complete genomeFRG domain protein1e-0963.5
NC_014366:2427968:243695624369562437705750Gamma proteobacterium HdN1, complete genomehypothetical protein2e-0963.2
NC_007492:2771021:278356727835672784469903Pseudomonas fluorescens PfO-1, complete genomehypothetical protein7e-0961.2
NC_013165:1407000:143754914375491438235687Slackia heliotrinireducens DSM 20476, complete genomeFRG domain protein6e-0858.2
NC_013406:7024149:7056583705658370577791197Paenibacillus sp. Y412MC10 chromosome, complete genomeFRG domain-containing protein2e-0756.6
NC_012881:3004784:3007915300791530091621248Desulfovibrio salexigens DSM 2638, complete genomeFRG domain protein3e-0755.8
NC_015977:2807782:282497928249792825839861Roseburia hominis A2-183 chromosome, complete genomeFRG domain-containing protein1e-0653.9
NC_015186:2197236:223192222319222232683762Acidiphilium multivorum AIU301, complete genomehypothetical protein7e-0651.2