Pre_GI: BLASTP Hits

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Query: NC_004547:2470978:2488352 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 2488352, End: 2488621, Length: 270

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:2613137:261736926173692617638270Pectobacterium wasabiae WPP163, complete genomeProtein of unknown function DUF25831e-35148
NC_014500:2479814:248742224874222487691270Dickeya dadantii 3937 chromosome, complete genomeputative inner membrane protein4e-26116
NC_014121:1589389:161118216111821611457276Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-21101
NC_016514:2713834:271875027187502719025276Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YchH1e-21101
NC_013508:1491945:151102115110211511299279Edwardsiella tarda EIB202, complete genomehypothetical protein6e-2199.4
NC_014618:2139639:215739921573992157674276Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein2e-2097.8
NC_015224:2095816:211595221159522116224273Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein2e-2097.4
NC_020064:2697116:270421727042172704498282Serratia marcescens FGI94, complete genomeProtein of unknown function (DUF2583)4e-2096.7
NC_015663:3586836:360405236040523604327276Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein9e-2095.5
NC_021066:839734:866057866057866332276Raoultella ornithinolytica B6, complete genomehypothetical protein9e-2095.5
NC_013716:1918664:192347219234721923750279Citrobacter rodentium ICC168, complete genomeputative outer membrane protein4e-1993.2
NC_010067:1116148:113623211362321136510279Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-1890.5
NC_012214:2221702:222408522240852224369285Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein1e-1685.1
NC_013971:1660144:170465017046501704937288Erwinia amylovora ATCC 49946 chromosome, complete genomemembrane protein1e-1685.1
NC_013961:1622616:166712316671231667410288Erwinia amylovora, complete genomeUncharacterized protein ychH1e-1685.1
NC_016816:2684336:268973826897382689977240Pantoea ananatis LMG 5342, complete genomehypothetical protein5e-1579.7
NC_003198:1771432:180222218022221802443222Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-1063.9