Pre_GI: BLASTP Hits

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Query: NC_004547:2470978:2474317 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 2474317, End: 2475462, Length: 1146

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004129:3452885:3459381345938134605261146Pseudomonas fluorescens Pf-5, complete genomehypothetical protein4e-133474
NC_008027:2331617:2349429234942923505741146Pseudomonas entomophila L48, complete genomehypothetical protein5e-133474
NC_013173:1356526:1390066139006613911961131Desulfomicrobium baculatum DSM 4028, complete genomemetal dependent phosphohydrolase2e-67256
NC_012691:1743038:1767843176784317690841242Tolumonas auensis DSM 9187, complete genomepolyA polymerase related protein4e-24112
NC_017192:497950:5110945110945124911398Arcobacter sp. L, complete genometRNA nucleotidyltransferase/poly(A) polymerase6e-1272.4
NC_016048:2167440:217938221793822180137756Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein9e-1065.1
NC_004557:691944:694390694390695022633Clostridium tetani E88, complete genomeputative poly A polymerase2e-0757.4
NC_013173:1356526:1387166138716613885451380Desulfomicrobium baculatum DSM 4028, complete genomepolynucleotide adenylyltransferase/metal dependent phosphohydrolase5e-0755.8