Pre_GI: BLASTP Hits

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Query: NC_004547:1174650:1177368 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 1177368, End: 1178066, Length: 699

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020211:4168189:418662941866294187312684Serratia marcescens WW4, complete genomelipoprotein involved with copper homeostasis and adhesion3e-74278
NC_012880:3421500:344923834492383449753516Dickeya dadantii Ech703, complete genomehypothetical protein1e-29129
NC_010831:173499:1885931885931896571065Chlorobium phaeobacteroides BS1, complete genomeprotein of unknown function DUF306 Meta and HslJ9e-1890.5