Pre_GI: BLASTP Hits

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Query: NC_004463:60225:78511 Bradyrhizobium japonicum USDA 110, complete genome

Start: 78511, End: 79803, Length: 1293

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:60216:8004680046813261281Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein0667
NC_015711:8852850:8869566886956688708461281Myxococcus fulvus HW-1 chromosome, complete genomeECF subfamily RNA polymerase sigma factor6e-122437
NC_016591:202342:2164152164152176861272Burkholderia sp. YI23 plasmid byi_2p, complete sequencehypothetical protein3e-106385
NC_014623:10036628:1005204710052047100533331287Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeRNA polymerase sigma-70 factor5e-104378
NC_008699:2260606:2262345226234522636131269Nocardioides sp. JS614, complete genomesigma-70 region 2 domain protein2e-97356
NC_013159:1885985:1890369189036918916551287Saccharomonospora viridis DSM 43017, complete genomeRNA polymerase, sigma subunit, ECF family2e-82306
NC_017093:6461486:6481348648134864826281281Actinoplanes missouriensis 431, complete genomeputative RNA polymerase ECF-subfamily sigma factor2e-72273
NC_014391:6640327:6640327664032766415471221Micromonospora aurantiaca ATCC 27029 chromosome, complete genomesigma-70 family RNA polymerase1e-70267
NC_018681:441014:4615964615964628731278Nocardia brasiliensis ATCC 700358 chromosome, complete genomesigma factor1e-70267
NC_008027:4280000:4283709428370942849471239Pseudomonas entomophila L48, complete genomeRNA polymerase sigma-70 factor, ECF subfamily7e-70264
NC_013889:1623697:1623697162369716250131317Thioalkalivibrio sp. K90mix chromosome, complete genomeputative RNA polymerase, sigma-24 subunit, ECF subfamily9e-69261
NC_014815:2639339:2649726264972626509461221Micromonospora sp. L5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily3e-66253
NC_010397:4533089:4535518453551845367441227Mycobacterium abscessus chromosome Chromosome, complete sequenceRNA polymerase sigma-70 factor, ECF subfamily3e-65249
NC_018750:4728870:4732837473283747340781242Streptomyces venezuelae ATCC 10712, complete genomeRNA polymerase sigma-70 factor, ECF subfamily6e-64244
NC_019902:3644000:3645711364571136470721362Thioalkalivibrio nitratireducens DSM 14787, complete genomeRNA polymerase sigma-70 factor, ECF subfamily9e-64244
NC_014623:8930235:8943502894350289447731272Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeECF subfamily RNA polymerase sigma-70 factor3e-63243
NC_019673:189487:2035772035772047401164Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein9e-63241
NC_019673:1384795:1390302139030213915101209Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-62240
NC_015434:5434500:5449124544912454503471224Verrucosispora maris AB-18-032 chromosome, complete genomeputative RNA polymerase, sigma-24 subunit, ECF subfamily protein6e-62238
NC_018681:867230:8660168660168672331218Nocardia brasiliensis ATCC 700358 chromosome, complete genomeRNA polymerase ECF-type sigma factor3e-61236
NC_017955:3731480:3820291382029138215471257Modestobacter marinus, complete genomeRNA polymerase sigma factor4e-61236
NC_013729:4835452:4850986485098648522211236Kribbella flavida DSM 17836, complete genomeputative RNA polymerase, sigma-24 subunit, ECF subfamily6e-59228
NC_009380:3043140:3057393305739330587031311Salinispora tropica CNB-440 chromosome, complete genomesigma-70 region 4 domain-containing protein1e-58227
NC_019904:5130458:5137186513718651384301245Echinicola vietnamensis DSM 17526 chromosome, complete genomeRNA polymerase sigma factor containing a TPR repeat domain3e-51202
NC_008255:2839147:2846183284618328474331251Cytophaga hutchinsonii ATCC 33406, complete genomeprobable sigma-70 factor, ECF subfamily1e-47191
NC_014210:2277971:2296055229605522973741320Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,putative RNA polymerase, sigma-24 subunit, ECF subfamily5e-43175
NC_017030:158947:1621281621281633691242Corallococcus coralloides DSM 2259 chromosome, complete genomeRNA polymerase sigma-70 factor2C ECF subfamily1e-42174
NC_014391:3596812:3596812359681235978461035Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeSigma-70 region 4 type 25e-41169
NC_006361:1547034:1565536156553615667681233Nocardia farcinica IFM 10152, complete genomeputative sigma factor1e-30134
NC_018524:4988810:501475850147585015384627Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomesigma-70 region 2 family protein4e-0859.7