Pre_GI: BLASTP Hits

Some Help

Query: NC_004347:718091:749154 Shewanella oneidensis MR-1, complete genome

Start: 749154, End: 749510, Length: 357

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019908:21970:400324003240364333Brachyspira pilosicoli P43/6/78 chromosome, complete genomehypothetical protein2e-1477.8
NC_018704:1424728:142569314256931426040348Amphibacillus xylanus NBRC 15112, complete genomeputative PadR family transcriptional regulator7e-1475.9
NC_007929:111092:122941122941123261321Lactobacillus salivarius subsp. salivarius UCC118, complete genomeTranscriptional regulator, PadR family7e-1165.9
NC_018664:2638102:264078026407802641118339Clostridium acidurici 9a chromosome, complete genometranscriptional regulator, PadR family4e-1063.5
NC_013665:1865122:187697718769771877318342Methanocella paludicola SANAE, complete genomeputative PadR-like family transcriptional regulator6e-1062.8
NC_007644:2452244:246911124691112469470360Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, PadR-like family9e-1062.4
NC_015216:1278706:131078813107881311147360Methanobacterium sp. AL-21 chromosome, complete genomePadR-like family transcriptional regulator2e-0960.8
NC_013730:4573077:459200745920074592351345Spirosoma linguale DSM 74, complete genometranscriptional regulator, PadR-like family3e-0960.5
NC_014323:3976351:401955840195584019887330Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein1e-0858.5
NC_014393:3650957:366769036676903668001312Clostridium cellulovorans 743B chromosome, complete genometranscriptional regulator PadR family protein5e-0856.6
NC_015144:367278:373210373210373542333Weeksella virosa DSM 16922 chromosome, complete genometranscriptional regulator, PadR-like family8e-0855.8
NC_012483:996555:101723810172381017600363Acidobacterium capsulatum ATCC 51196, complete genometranscriptional regulator, PadR family7e-0855.8
NC_015589:814530:827671827671828009339Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator PadR family protein1e-0755.5
NC_003888:3111998:311595731159573116334378Streptomyces coelicolor A3(2), complete genomehypothetical protein1e-0755.5
NC_015683:2249949:227154922715492271923375Corynebacterium ulcerans BR-AD22 chromosome, complete genomePadR family transcription regulator1e-0755.1
NC_013406:1145268:114943211494321149938507Paenibacillus sp. Y412MC10 chromosome, complete genomePadR-like family transcriptional regulator2e-0754.7
NC_014624:828943:843139843139843462324Eubacterium limosum KIST612 chromosome, complete genometranscription regulator (putative)2e-0754.7
NC_009464:931647:932620932620932970351Uncultured methanogenic archaeon RC-I, complete genomeputative transcription regulator (PadR family)2e-0754.3
NC_019897:700332:733396733396733758363Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator3e-0753.9
NC_017317:2149794:217301021730102173384375Corynebacterium ulcerans 809 chromosome, complete genomePadR-family transcription regulator3e-0753.9
NC_015690:6595395:660345166034516603786336Paenibacillus mucilaginosus KNP414 chromosome, complete genomePadR-like family transcriptional regulator5e-0753.1
NC_013739:2057781:207558820755882075941354Conexibacter woesei DSM 14684, complete genometranscriptional regulator, PadR-like family5e-0753.1
NC_006582:2205154:221626422162642216584321Bacillus clausii KSM-K16, complete genometranscriptional regulator, PadR family5e-0753.1
NC_011660:1889504:189448518944851894811327Listeria monocytogenes HCC23 chromosome, complete genomePadR family transcriptional regulator5e-0753.1
NC_009328:293000:348394348394348717324Geobacillus thermodenitrificans NG80-2 chromosome, complete genometranscriptional regulator6e-0752.8
NC_010184:4497473:450447345044734504817345Bacillus weihenstephanensis KBAB4, complete genometranscriptional regulator, PadR-like family6e-0752.8
NC_015500:2417041:242087724208772421203327Treponema brennaborense DSM 12168 chromosome, complete genometranscriptional regulator, PadR-like family7e-0752.8
NC_013037:6209424:621816562181656218518354Dyadobacter fermentans DSM 18053, complete genometranscriptional regulator, PadR-like family8e-0752.4
NC_014963:4416339:442588144258814426225345Terriglobus saanensis SP1PR4 chromosome, complete genomePadR family transcriptional regulator1e-0652
NC_009712:334143:337653337653337979327Candidatus Methanoregula boonei 6A8, complete genomePadR-like family transcriptional regulator1e-0651.6
NC_010184:1017000:102748510274851027817333Bacillus weihenstephanensis KBAB4, complete genometranscriptional regulator, PadR-like family2e-0651.2
NC_006624:1448165:144958414495841449883300Thermococcus kodakarensis KOD1, complete genometranscription regulator, PadR-like family3e-0650.8
NC_015434:228912:250216250216250554339Verrucosispora maris AB-18-032 chromosome, complete genomePadR-like family transcriptional regulator2e-0650.8
NC_013891:640784:661436661436661762327Listeria seeligeri serovar 1/2b str. SLCC3954, complete genometranscriptional regulator, PadR family3e-0650.4
NC_011725:1032500:104332810433281043660333Bacillus cereus B4264 chromosome, complete genomePadR family transcriptional regulator4e-0650.1
NC_017208:1050414:106205310620531062385333Bacillus thuringiensis serovar chinensis CT-43 chromosome, completePadR family transcriptional regulator4e-0650.1
NC_014171:1018338:102901910290191029351333Bacillus thuringiensis BMB171 chromosome, complete genomePadR family transcriptional regulator4e-0650.1
NC_004722:1008500:101926110192611019602342Bacillus cereus ATCC 14579, complete genomeTranscriptional regulator, PadR family4e-0650.1
NC_005957:4472800:447576544757654476109345Bacillus thuringiensis serovar konkukian str. 97-27, completepossible transcriptional regulator, PadR family5e-0649.7
NC_013665:1766158:179097717909771791321345Methanocella paludicola SANAE, complete genomeputative PadR-like family transcriptional regulator6e-0649.7
NC_014393:4352216:437518143751814375525345Clostridium cellulovorans 743B chromosome, complete genometranscriptional regulator, PadR-like family7e-0649.3
NC_007907:4956500:496671849667184967065348Desulfitobacterium hafniense Y51, complete genomehypothetical protein8e-0648.9
NC_008009:2430509:244906824490682449397330Acidobacteria bacterium Ellin345, complete genometranscriptional regulator, PadR-like family1e-0548.9