Pre_GI: BLASTP Hits

Some Help

Query: NC_004337:2035945:2045549 Shigella flexneri 2a str. 301, complete genome

Start: 2045549, End: 2046217, Length: 669

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:2090679:210114621011462101814669Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-129461
NC_013353:604719:614126614126614794669Escherichia coli O103:H2 str. 12009, complete genomemethylase4e-129460
NC_011415:644811:654364654364655032669Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-129460
AP010958:604719:614126614126614794669Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative methylase4e-129460
NC_013941:733286:740900740900741568669Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein3e-128457
NC_004431:1352906:137182913718291372494666Escherichia coli CFT073, complete genomeHypothetical protein ybcY precursor8e-128456
NC_008258:2045000:205422420542242054880657Shigella flexneri 5 str. 8401, complete genomeunknown protein encoded within prophage3e-127454
NC_013361:649518:657958657958658614657Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein3e-127454
NC_011742:585908:604835604835605419585Escherichia coli S88 chromosome, complete genomeAdoMet-dependent methyltransferase; DLP12 prophage1e-111401
NC_011751:1377457:139715313971531397737585Escherichia coli UMN026 chromosome, complete genomeputative AdoMet-dependent methyltransferase; DLP12 prophage3e-111400
AC_000091:558920:581375581375581959585Escherichia coli W3110 DNA, complete genomepredicted SAM-dependent methyltransferase9e-111399
NC_000913:558920:581375581375581959585Escherichia coli K12, complete genomeDLP12 prophage; predicted SAM-dependent methyltransferase9e-111399
NC_015224:2701914:271929227192922719948657Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,SAM-dependent methyltransferase9e-86316
NC_012731:3411161:344695834469583447611654Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein1e-80299
NC_006625:1:9505950510158654Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequenceunknown protein encoded within prophage2e-79295
NC_007613:1038000:104627910462791046710432Shigella boydii Sb227, complete genomehypothetical protein3e-79294
NC_008149:1669921:167579216757921676451660Yersinia pestis Nepal516, complete genomehypothetical protein5e-75280
NC_004088:2541033:255168525516852552344660Yersinia pestis KIM, complete genomehypothetical protein5e-75280
NC_008150:1543635:154950615495061550165660Yersinia pestis Antiqua, complete genomehypothetical protein5e-75280
NC_005810:2043730:204960220496022050261660Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein5e-75280
NC_010634:2252329:225820022582002258859660Yersinia pseudotuberculosis PB1/+, complete genomemethyltransferase type 125e-75280
NC_003143:2258636:226450722645072265166660Yersinia pestis CO92, complete genomehypothetical protein5e-75280
NC_006155:2334122:233999323399932340652660Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein5e-75280
NC_009381:1258396:126827912682791268938660Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein5e-75280
NC_009708:2392640:240329324032932403952660Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein5e-75280
NC_014029:2335021:234567323456732346332660Yersinia pestis Z176003 chromosome, complete genomehypothetical protein5e-75280
NC_017154:2258228:226409822640982264757660Yersinia pestis D106004 chromosome, complete genomehypothetical protein5e-75280
NC_017265:2263347:227264322726432273302660Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein5e-75280
NC_010465:2428620:243926024392602439919660Yersinia pseudotuberculosis YPIII, complete genomeMethyltransferase type 125e-75280
NC_015761:1599000:161191316119131612575663Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-73275
NC_010067:1300606:130630413063041306966663Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-73274
NC_006625:1:3643641071708Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequenceunknown protein encoded within prophage4e-73274
NC_011205:1633353:163905516390551639717663Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853methyltransferase type 122e-72272
NC_011294:1493849:149953314995331500195663Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-72272
NC_012125:2143246:214893021489302149592663Salmonella enterica subsp. enterica serovar Paratyphi C strainSAM-dependent methyltransferase2e-72272
NC_016832:1582273:159332815933281593990663Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-72272
NC_016810:1670112:168574316857431686405663Salmonella enterica subsp. enterica serovar Typhimurium strmethyltransferase2e-72272
NC_016856:1723236:173886717388671739529663Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative SAM-dependent methyltransferase2e-72272
NC_016860:1710950:172658117265811727243663Salmonella enterica subsp. enterica serovar Typhimurium strmethyltransferase2e-72272
NC_017046:1669995:168562616856261686288663Salmonella enterica subsp. enterica serovar Typhimurium str. 798methyltransferase2e-72272
NC_011094:1683979:169963016996301700292663Salmonella enterica subsp. enterica serovar Schwarzengrund strtype 12 methyltransferase1e-72272
NC_011149:1429523:147760014776001478310711Salmonella enterica subsp. enterica serovar Agona str. SL483,methyltransferase type 121e-72272
NC_011080:1709612:172519517251951725905711Salmonella enterica subsp. enterica serovar Newport str. SL254,methyltransferase type 121e-72272
NC_006905:1726416:174204617420461742708663Salmonella enterica subsp. enterica serovar Choleraesuis strputative SAM-dependent methyltransferase2e-72272
NC_011083:1761352:177699217769921777654663Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,methyltransferase type 126e-72270
NC_016831:1468691:148432514843251484987663Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein4e-71267
NC_011274:1544653:155033715503371550999663Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein4e-71267
NC_020418:1397112:140828514082851408944660Morganella morganii subsp. morganii KT, complete genomePutative SAM-dependent methyltransferase1e-65249
NC_010102:1388344:139401313940131394531519Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-52205
NC_016857:1670112:168588716858871686405519Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74type 12 methyltransferase3e-52204
NC_004631:1587000:159660315966031597040438Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-41169
NC_003198:1378457:138414113841411384578438Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-41169
NC_016863:1671428:168728416872841687721438Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative SAM-dependent methyltransferase2e-41168
NC_003197:1713259:172911517291151729552438Salmonella typhimurium LT2, complete genomeputative SAM-dependent methyltransferase2e-41168
NC_011894:2385834:239177123917712392445675Methylobacterium nodulans ORS 2060, complete genomeMethyltransferase type 121e-36153
NC_011894:5056901:506743450674345068108675Methylobacterium nodulans ORS 2060, complete genomeMethyltransferase type 122e-36152
NC_013440:1480855:149997414999741500627654Haliangium ochraceum DSM 14365, complete genomeMethyltransferase type 121e-24112
NC_018524:4564493:456923345692334569955723Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehypothetical protein1e-1996.3