Pre_GI: BLASTP Hits

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Query: NC_004129:926479:930598 Pseudomonas fluorescens Pf-5, complete genome

Start: 930598, End: 931734, Length: 1137

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007974:1607500:1627722162772216288791158Ralstonia metallidurans CH34 chromosome 2, complete sequenceFAD dependent oxidoreductase3e-111402
NC_008314:1275617:1280658128065812818241167Ralstonia eutropha H16 chromosome 2, complete sequenceFAD dependent oxidoreductase4e-108391
NC_002516:4321000:4323758432375843248851128Pseudomonas aeruginosa PAO1, complete genomehypothetical protein7e-107387
NC_008463:1188951:1200752120075212018791128Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative amino acid oxidase1e-106386
NC_010794:1673049:1691274169127416924071134Methylacidiphilum infernorum V4, complete genomeGlycine/D-amino acid oxidase (deaminating)1e-70266
NC_009511:5362705:5366646536664653677491104Sphingomonas wittichii RW1 chromosome, complete genomeFAD dependent oxidoreductase2e-59230
NC_014217:3431878:3446251344625134474201170Starkeya novella DSM 506 chromosome, complete genomeFAD dependent oxidoreductase1e-1068.2
NC_003296:1980687:1993507199350719947031197Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein8e-0961.6
NC_010511:4313769:4313769431376943163002532Methylobacterium sp. 4-46 chromosome, complete genomeFAD dependent oxidoreductase2e-0757
NC_016642:2440070:2470096247009624712711176Pseudovibrio sp. FO-BEG1 chromosome, complete genomeFAD-dependent oxidoreductase domain-containing protein 14e-0756.2
NC_014654:1:1797717977194551479Halanaerobium sp. 'sapolanicus' chromosome, complete genomeFAD dependent oxidoreductase8e-0755.1