Pre_GI: BLASTP Hits

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Query: NC_004129:5846415:5879415 Pseudomonas fluorescens Pf-5, complete genome

Start: 5879415, End: 5881304, Length: 1890

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009434:3413461:3419737341973734215421806Pseudomonas stutzeri A1501, complete genometype V secretory pathway, adhesin AidA0682
NC_010581:2943913:2946956294695629487941839Beijerinckia indica subsp. indica ATCC 9039, complete genomeprotein of unknown function DUF13021e-45184
NC_008027:2648560:2668965266896526707911827Pseudomonas entomophila L48, complete genomehypothetical protein4e-45183
NC_020829:4429435:4432822443282244344051584Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein2e-34147
NC_014323:3976351:4036818403681840385091692Herbaspirillum seropedicae SmR1 chromosome, complete genomehypothetical protein4e-34146
NC_011770:3396637:3402466340246634040521587Pseudomonas aeruginosa LESB58, complete genomehypothetical protein1e-32141
NC_007509:309348:3093483093483110541707Burkholderia sp. 383 chromosome 3, complete sequenceprotein of unknown function DUF13022e-29131
NC_010623:1871492:1934933193493319367621830Burkholderia phymatum STM815 chromosome 2, complete sequenceprotein of unknown function DUF13022e-28127
NC_008313:886248:9135459135459154911947Ralstonia eutropha H16 chromosome 1, complete sequencehypothetical protein1e-26122
NC_017506:1:6910691085711662Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein1e-1585.1
NC_010512:951527:9624739624739641701698Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceprotein of unknown function DUF13027e-1479.3
NC_009434:695582:6955826955826973331752Pseudomonas stutzeri A1501, complete genomehypothetical protein9e-1479
NC_015563:1951368:1974343197434319760161674Delftia sp. Cs1-4 chromosome, complete genomehypothetical protein5e-1170.1
NC_014618:3700640:3710445371044537121271683Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein9e-1065.9
NC_013856:692000:7001897001897018831695Azospirillum sp. B510 plasmid pAB510b, complete sequencehypothetical protein1e-0965.5