Pre_GI: BLASTP Hits

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Query: NC_004129:5481629:5485205 Pseudomonas fluorescens Pf-5, complete genome

Start: 5485205, End: 5485960, Length: 756

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010511:6756000:677037267703726771187816Methylobacterium sp. 4-46 chromosome, complete genomehypothetical protein3e-75281
NC_011894:79282:792827928280016735Methylobacterium nodulans ORS 2060, complete genomehypothetical protein4e-75281
NC_008391:2045348:206949620694962070275780Burkholderia cepacia AMMD chromosome 2, complete sequencePGAP1 family protein2e-72272
NC_010552:58294:965419654197320780Burkholderia ambifaria MC40-6 chromosome 2, complete sequencePGAP1 family protein2e-72272
NC_009668:1726000:172774517277451728473729Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceprolyl oligopeptidase family protein5e-69260
NC_013171:228356:245554245554246327774Anaerococcus prevotii DSM 20548, complete genomedipeptidylaminopeptidase/acylaminoacyl- peptidase-like protein1e-0757.4
NC_015723:430165:447818447818448774957Cupriavidus necator N-1 chromosome 2, complete sequencehypothetical protein7e-0754.3
NC_010814:1336943:135274013527401353582843Geobacter lovleyi SZ, complete genomehypothetical protein9e-0754.3
NC_016023:579000:584104584104584997894Bacillus coagulans 36D1 chromosome, complete genomeputative alpha/beta hydrolase superfamily protein1e-0653.9
NC_013406:1145268:115059611505961151423828Paenibacillus sp. Y412MC10 chromosome, complete genomePGAP1 family protein2e-0653.1
NC_019673:8799533:881178188117818812605825Saccharothrix espanaensis DSM 44229 complete genomealpha/beta hydrolase fold containing protein3e-0652.4