Pre_GI: BLASTP Hits

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Query: NC_004129:5373886:5402711 Pseudomonas fluorescens Pf-5, complete genome

Start: 5402711, End: 5404045, Length: 1335

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018080:5091772:5125268512526851265931326Pseudomonas aeruginosa DK2 chromosome, complete genometype IV b pilus protein1e-86320
NC_008463:5246954:5280280528028052816051326Pseudomonas aeruginosa UCBPP-PA14, complete genometype IV b pilus protein1e-86320
NC_009656:4527457:4605863460586346071881326Pseudomonas aeruginosa PA7 chromosome, complete genometype IV b pilus protein4e-86318
NC_007507:11000:1390713907152531347Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative PilO-like pilus assembly protein3e-49196
NC_012751:942315:9426629426629439721311Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completePilO type IV pilus biogenesis outer membrane protein5e-30132
NC_012751:1296877:1315990131599013173001311Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completePilO type IV pilus biogenesis outer membrane protein4e-30132
NC_005126:2063667:2073784207378420750761293Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein6e-22105
NC_007950:185500:2017682017682030571290Polaromonas sp. JS666 plasmid 2, complete sequencehypothetical protein6e-1479
NC_015850:1155376:1175738117573811770961359Acidithiobacillus caldus SM-1 chromosome, complete genomehypothetical protein1e-0654.7
NC_012214:3502992:3514268351426835155481281Erwinia pyrifoliae Ep1/96, complete genomePilin accessory protein2e-0654.3