Pre_GI: BLASTP Hits

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Query: NC_004129:4368356:4374337 Pseudomonas fluorescens Pf-5, complete genome

Start: 4374337, End: 4374924, Length: 588

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011770:2690501:270942127094212710008588Pseudomonas aeruginosa LESB58, complete genomehypothetical protein3e-91333
NC_009792:1770106:177774617777461778345600Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-36152
NC_009648:1541699:156088115608811561477597Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein3e-36151
NC_011283:2836000:290201929020192902615597Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein8e-36149
NC_015761:1017301:101886610188661019468603Salmonella bongori NCTC 12419, complete genomebacteriophage protein1e-35149
NC_017046:2756000:276159827615982762200603Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage protein3e-35147
NC_016856:2812905:281606728160672816669603Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein3e-35147
NC_011080:2761403:276456527645652765167603Salmonella enterica subsp. enterica serovar Newport str. SL254,gifsy-2 prophage protein3e-35147
NC_009708:2537557:254764525476452548238594Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein2e-34145
NC_013850:2182337:220551122055112206107597Klebsiella variicola At-22 chromosome, complete genomeprotein of unknown function DUF13671e-34145
NC_016514:2476359:249966024996602500262603Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein3e-34144
NC_015424:2316228:232593823259382326525588Aeromonas veronii B565 chromosome, complete genomebacteriophage protein2e-32138
NC_008563:1475500:148148314814831482082600Escherichia coli APEC O1, complete genomehypothetical bacteriophage protein6e-30130
NC_011294:1465500:147637514763751476974600Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein7e-30130
NC_020211:2094500:210682921068292107425597Serratia marcescens WW4, complete genomehypothetical protein2e-29128
CP002516:2580774:258882025888202589419600Escherichia coli KO11, complete genomeprotein of unknown function DUF13675e-29127
NC_016902:2580774:258882025888202589419600Escherichia coli KO11FL chromosome, complete genomehypothetical protein5e-29127
NC_002655:2142587:214757821475782148177600Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded within prophage CP-933R4e-29127
NC_002695:1929215:193898819389881939587600Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein4e-29127
NC_011415:1472500:149298914929891493588600Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-29127
NC_003198:1908238:191622819162281916827600Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein9e-29126
NC_012214:1974500:198613619861361986735600Erwinia pyrifoliae Ep1/96, complete genomeputative bacteriophage protein3e-27121
NC_011205:1345511:136710913671091367708600Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-26119
NC_011294:1220526:123119712311971231796600Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-26119
NC_016831:1734292:174595217459521746551600Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-26119
NC_011415:2277559:228598022859802286576597Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-24112
NC_009801:2193000:219955521995552200151597Escherichia coli E24377A, complete genomehypothetical protein2e-24112
NC_012917:2641000:265518826551882655835648Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein9e-1476.6
NC_012779:1939747:195351319535131954157645Edwardsiella ictaluri 93-146, complete genomehypothetical protein8e-1373.6
NC_009655:1357486:137278013727801373415636Actinobacillus succinogenes 130Z chromosome, complete genomehypothetical protein4e-1271.2