Pre_GI: BLASTP Hits

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Query: NC_004129:3965947:3973732 Pseudomonas fluorescens Pf-5, complete genome

Start: 3973732, End: 3974871, Length: 1140

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:2698572:270645827064582707378921Pseudomonas mendocina NK-01 chromosome, complete genomeacetyltransferase5e-161567
NC_014910:2585747:259558825955882596499912Alicycliphilus denitrificans BC chromosome, complete genomegcn5-related n-acetyltransferase8e-130463
NC_015425:641000:645887645887646396510Clostridium botulinum BKT015925 chromosome, complete genomeGNAT family acetyltransferase7e-32138
NC_010674:658596:673380673380673895516Clostridium botulinum B str. Eklund 17B, complete genomeGnaT-family acetyltransferase1e-25117
NC_010723:622928:638577638577639092516Clostridium botulinum E3 str. Alaska E43, complete genomeGnaT-family acetyltransferase3e-24113
NC_016048:522637:542125542125542742618Oscillibacter valericigenes Sjm18-20, complete genomeputative acetyltransferase3e-1996.7
NC_013166:82986:107723107723108133411Kangiella koreensis DSM 16069, complete genomeGreA/GreB family elongation factor1e-1791.3
NC_014623:6950638:695431569543156954749435Stigmatella aurantiaca DW4/3-1 chromosome, complete genometranscription elongation factor8e-1788.6
NC_016614:822715:840321840321840728408Vibrio sp. EJY3 chromosome 2, complete sequencenucleoside diphosphate kinase regulator2e-1583.6
NC_003143:4105754:412869641286964129106411Yersinia pestis CO92, complete genomenucleoside diphosphate kinase regulator7e-1582
NC_009381:321577:344520344520344930411Yersinia pestis Pestoides F chromosome, complete genomenucleoside diphosphate kinase regulator7e-1582
NC_009708:483253:506237506237506647411Yersinia pseudotuberculosis IP 31758 chromosome, complete genomenucleoside diphosphate kinase regulator7e-1582
NC_014029:4057696:408064640806464081056411Yersinia pestis Z176003 chromosome, complete genomenucleoside diphosphate kinase regulator7e-1582
NC_017168:1729922:175286417528641753274411Yersinia pestis A1122 chromosome, complete genomenucleoside diphosphate kinase regulator7e-1582
NC_007519:1244198:126286712628671263280414Desulfovibrio alaskensis G20 chromosome, complete genomeGreA/GreB family elongation factor3e-1376.3
NC_014972:480355:486589486589487002414Desulfobulbus propionicus DSM 2032 chromosome, complete genomeGreA/GreB family elongation factor5e-1375.9
NC_011001:2085986:213958521395852139983399Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative transcription elongation factor5e-1169.3
NC_010515:2691000:269403526940352694433399Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceGreA/GreB family elongation factor5e-1169.3
NC_007511:1147696:115267911526791153077399Burkholderia sp. 383 chromosome 2, complete sequenceGreA/GreB family elongation factor7e-1168.6
NC_009952:526456:544496544496544927432Dinoroseobacter shibae DFL 12, complete genomeGreA/GreB family elongation factor2e-0860.1
NC_012808:3711806:372314737231473723470324Methylobacterium extorquens AM1, complete genomeputative transcription elongation factor (GreA/GreB domain protein)4e-0652.8
NC_010172:3712000:372149237214923721863372Methylobacterium extorquens PA1, complete genometranscription elongation factor GreA/GreB domain protein5e-0652.4
NC_005071:87907:115006115006115545540Prochlorococcus marinus str. MIT 9313, complete genomeacetyltransferase7e-0652
NC_015318:1151422:117480011748001175270471Hippea maritima DSM 10411 chromosome, complete genometranscription elongation factor GreA1e-0551.6