Pre_GI: BLASTP Hits

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Query: NC_004129:2328491:2353982 Pseudomonas fluorescens Pf-5, complete genome

Start: 2353982, End: 2354422, Length: 441

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014931:2336465:233646523364652337154690Variovorax paradoxus EPS chromosome, complete genomepentapeptide repeat protein2e-36150
NC_015976:2064387:207236920723692073097729Sphingobium sp. SYK-6, complete genomehypothetical protein2e-25114
NC_014210:2638773:265437026543702655101732Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,pentapeptide repeat protein1e-1582
NC_004193:375416:665824665824666456633Oceanobacillus iheyensis HTE831, complete genomehypothetical protein1e-0755.1
NC_018748:1311465:133217413321741332749576Emticicia oligotrophica DSM 17448 chromosome, complete genomepentapeptide repeat protein2e-0754.7
NC_013037:1015210:102602410260241026668645Dyadobacter fermentans DSM 18053, complete genomepentapeptide repeat protein7e-0752.8
NC_015416:2864917:2864917286491728677782862Methanosaeta concilii GP-6 chromosome, complete genomepentapeptide repeat-containing protein8e-0752.4
NC_012962:1364638:1371030137103013735042475Photorhabdus asymbiotica, complete genomehypothetical protein4e-0650.4
NC_016641:1148220:116637511663751166983609Paenibacillus terrae HPL-003 chromosome, complete genomehypothetical protein5e-0650.1
NC_010170:1661915:1675162167516216762111050Bordetella petrii, complete genomehypothetical protein5e-0649.7
NC_009665:593359:607811607811608488678Shewanella baltica OS185 chromosome, complete genomepentapeptide repeat-containing protein6e-0649.7
NC_016641:2394628:241517324151732415811639Paenibacillus terrae HPL-003 chromosome, complete genomehypothetical protein6e-0649.7
NC_009052:4437649:444095244409524441614663Shewanella baltica OS155, complete genomepentapeptide repeat protein7e-0649.3
NC_005125:2269343:227409522740952274931837Gloeobacter violaceus PCC 7421, complete genomehypothetical protein7e-0649.3