Pre_GI: BLASTP Hits

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Query: NC_004129:1741816:1766173 Pseudomonas fluorescens Pf-5, complete genome

Start: 1766173, End: 1767102, Length: 930

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:1518113:155092315509231551849927Pseudomonas putida F1, complete genomeprotein of unknown function DUF6, transmembrane5e-95347
NC_015410:2838132:284019928401992841143945Pseudomonas mendocina NK-01 chromosome, complete genomehypothetical protein5e-72271
NC_009439:2337024:235598523559852356929945Pseudomonas mendocina ymp, complete genomehypothetical protein3e-66252
NC_015856:4975815:499021449902144991116903Collimonas fungivorans Ter331 chromosome, complete genomehypothetical protein6e-48191
NC_016628:1190366:120649312064931207446954Vibrio furnissii NCTC 11218 chromosome 2, complete sequencehypothetical protein4e-40165
NC_014973:4503054:450856245085624509521960Geobacter sp. M18 chromosome, complete genomehypothetical protein5e-33141
NC_014976:170683:170683170683171561879Bacillus subtilis BSn5 chromosome, complete genomecysteine and O-acetyl serine efflux permease2e-0757
NC_017195:2027430:203142320314232032301879Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeYoaV2e-0757
NC_020244:2049753:205171920517192052534816Bacillus subtilis XF-1, complete genomecysteine and O-acetyl serine efflux permease3e-0756.2
NC_016047:2150000:215285621528562153734879Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completehypothetical protein3e-0652.8
NC_014479:2038348:204106020410602041938879Bacillus subtilis subsp. spizizenii str. W23 chromosome, completecysteine and O-acetyl serine efflux permease5e-0652