Pre_GI: BLASTP Hits

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Query: NC_003911:2379254:2392851 Silicibacter pomeroyi DSS-3, complete genome

Start: 2392851, End: 2393210, Length: 360

Host Lineage: Ruegeria pomeroyi; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Formerly Silicibacter pomeroyi, his marine bacterium is a member of the Roseobacter clade and was isolated off of the coast of Georgia in 1998. Dimethylsulfoniopropionate-degrading bacterium. Capable of degrading the organic sulfur compound DMSP (dimethylsulfoniopropionate) and can metabolize a number of sulfur compounds. DMSP is synthesized by marine algae and the degradation product dimethylsulfide contributes to the global sulfur cycle.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008750:450233:452703452703453035333Shewanella sp. W3-18-1, complete genometranscriptional regulator, TraR/DksA family2e-1477.4
NC_007517:1107408:112250811225081122900393Geobacter metallireducens GS-15, complete genometranscriptional regulators, TraR/DksA family1e-0858.9
NC_007347:1239982:124510212451021245476375Ralstonia eutropha JMP134 chromosome 1, complete sequenceZn-finger, prokaryotic DksA/TraR C4 type4e-0650.1