Pre_GI: BLASTP Hits

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Query: NC_003888:8594500:8610851 Streptomyces coelicolor A3(2), complete genome

Start: 8610851, End: 8611627, Length: 777

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020063:3690308:371340637134063714248843Enterobacteriaceae bacterium strain FGI 57, complete genomenitroreductase3e-61234
NC_007005:3199820:322579432257943226615822Pseudomonas syringae pv. syringae B728a, complete genomeNitroreductase1e-39162
NC_006361:2534192:254854625485462549382837Nocardia farcinica IFM 10152, complete genomeputative nitroreductase3e-30132
NC_010334:1561691:156419315641931564915723Shewanella halifaxensis HAW-EB4, complete genomenitroreductase6e-23107
NC_007164:1839154:184059218405921841347756Corynebacterium jeikeium K411, complete genomeputative oxygen-insensitive NADPH nitroreductase9e-1890.9
NC_012814:1856632:186008418600841860860777Bifidobacterium animalis subsp. lactis Bl-04, complete genomeNADPH-flavin oxidoreductase1e-1790.1
NC_014479:2505823:251882625188262519566741Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative nitroreductase A7e-1787.8
NC_015634:2547144:255175225517522552495744Bacillus coagulans 2-6 chromosome, complete genomenitroreductase1e-1686.7
NC_017195:2498113:253864025386402539380741Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeoxygen-insensitive NADPH nitroreductase2e-1686.7
NC_016047:2658000:267925826792582679998741Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeoxygen-insensitive NADPH nitroreductase2e-1686.3
NC_016612:3361802:337658433765843377306723Klebsiella oxytoca KCTC 1686 chromosome, complete genomenitroreductase A3e-1685.5
NC_016641:438500:445589445589446329741Paenibacillus terrae HPL-003 chromosome, complete genomenitroreductase A4e-1685.1
NC_013192:618936:622860622860623618759Leptotrichia buccalis DSM 1135, complete genomenitroreductase4e-1685.1
NC_009901:1516340:151890115189011519629729Shewanella pealeana ATCC 700345, complete genomenitroreductase6e-1684.7
NC_009004:1770497:178838017883801789102723Lactococcus lactis subsp. cremoris MG1363, complete genomenitroreductase family protein7e-1684.3
NC_015859:1147537:115451411545141155437924Corynebacterium variabile DSM 44702 chromosome, complete genomenitro/flavin reductase7e-1684.3
NC_019435:747162:749187749187749909723Lactococcus lactis subsp. cremoris UC509.9, complete genomenitroreductase family protein8e-1684.3
NC_008527:740060:742085742085742807723Lactococcus lactis subsp. cremoris SK11, complete genomeNitroreductase9e-1580.5
NC_009053:553298:552582552582553301720Actinobacillus pleuropneumoniae L20, complete genomepredicted nitroreductase1e-1480.1
NC_018720:176306:202303202303203148846Bifidobacterium asteroides PRL2011 chromosome, complete genomenitroreductase1e-1377
NC_020995:245671:249220249220249945726Enterococcus casseliflavus EC20, complete genomehypothetical protein6e-1374.7
NC_008526:565902:570691570691571407717Lactobacillus casei ATCC 334, complete genomeNitroreductase3e-1168.9
NC_013508:2356865:236002723600272360749723Edwardsiella tarda EIB202, complete genomenitroreductase A6e-1167.8
NC_012779:2424967:242758324275832428305723Edwardsiella ictaluri 93-146, complete genomeoxygen-insensitive NADPH nitroreductase8e-1167.8
NC_017192:1000096:100113210011321001890759Arcobacter sp. L, complete genomenitroreductase5e-0961.6
NC_015164:1120288:112763411276341128374741Bacteroides salanitronis DSM 18170 chromosome, complete genomenitroreductase8e-0857.8
NC_009483:1448552:147116314711631471723561Geobacter uraniireducens Rf4 chromosome, complete genomenitroreductase1e-0653.5