Pre_GI: BLASTP Hits

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Query: NC_003888:8594500:8597980 Streptomyces coelicolor A3(2), complete genome

Start: 8597980, End: 8598822, Length: 843

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015957:7301546:730154673015467302400855Streptomyces violaceusniger Tu 4113 chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-78291
NC_020244:747762:772201772201773046846Bacillus subtilis XF-1, complete genomehypothetical protein2e-33142
NC_017195:709098:732428732428733276849Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeYesF5e-30131
NC_000964:732255:754257754257755117861Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein1e-29130
NC_008699:590000:6064986064986078021305Nocardioides sp. JS614, complete genomeprotein of unknown function DUF14865e-1994.7
NC_015690:1726000:175248817524881753378891Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein2e-1066.2
NC_013131:9711508:973065897306589731533876Catenulispora acidiphila DSM 44928, complete genomeNmrA family protein5e-1065.1
NC_019962:1875952:189152618915261892398873Natrinema pellirubrum DSM 15624, complete genomeputative nucleoside-diphosphate sugar epimerase6e-1064.7
NC_016935:2256000:228253822825382283422885Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein1e-0963.9
NC_004193:2921103:293774129377412938586846Oceanobacillus iheyensis HTE831, complete genomehypothetical protein3e-0962.8
NC_009832:1664238:166423816642381665077840Serratia proteamaculans 568, complete genomeNmrA family protein5e-0962
NC_015957:4963500:497324149732414973447207Streptomyces violaceusniger Tu 4113 chromosome, complete genome8e-0961.2
NC_009953:5193471:520930052093005210151852Salinispora arenicola CNS-205 chromosome, complete genomeNmrA family protein3e-0755.8
NC_013730:4502965:452237345223734523251879Spirosoma linguale DSM 74, complete genomeNmrA family protein3e-0755.8
NC_014541:4167916:417031241703124171148837Ferrimonas balearica DSM 9799 chromosome, complete genomeNmrA family protein8e-0754.3
NC_013222:1659619:168864716886471689489843Robiginitalea biformata HTCC2501, complete genomehypothetical protein9e-0754.3
NC_016010:137658:156591156591157448858Xanthomonas axonopodis pv. citrumelo F1 chromosome, completenucleoside-diphosphate sugar epimerase1e-0653.9
NC_020126:1943092:197870519787051979544840Myxococcus stipitatus DSM 14675, complete genomeNmrA family protein2e-0653.5
NC_014151:856354:872623872623873462840Cellulomonas flavigena DSM 20109 chromosome, complete genomehypothetical protein5e-0652