Pre_GI: BLASTP Hits

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Query: NC_003888:7866148:7869233 Streptomyces coelicolor A3(2), complete genome

Start: 7869233, End: 7869625, Length: 393

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016109:4645905:4662361466236146635511191Kitasatospora setae KM-6054, complete genomeputative transposase1e-25115
NC_016582:1639375:1650687165068716518201134Streptomyces bingchenggensis BCW-1 chromosome, complete genomeIS4 family transposase2e-22104
NC_012987:32296:4895548955503131359Methylobacterium extorquens DM4 plasmid p1METDI, complete sequencetransposase of ISMdi28, IS701 family8e-1475.9
NC_018524:2246225:2256521225652122576691149Nocardiopsis alba ATCC BAA-2165 chromosome, complete genometransposase DDE domain protein7e-1269.3
NC_013235:4975947:4990976499097649921871212Nakamurella multipartita DSM 44233, complete genometransposase IS4 family protein5e-1166.6
NC_009921:3419978:3419978341997834211471170Frankia sp. EAN1pec, complete genomeFOG: Transposase-like protein5e-1166.2
NC_009921:3854969:3876749387674938779211173Frankia sp. EAN1pec, complete genometransposase IS4 family protein6e-1166.2
NC_008268:1748635:1753980175398017551101131Rhodococcus sp. RHA1, complete genomeprobable transposase3e-1063.9
NC_015957:196000:206249206249206647399Streptomyces violaceusniger Tu 4113 chromosome, complete genometransposase3e-0960.5
NC_015312:6717973:6721226672122667224551230Pseudonocardia dioxanivorans CB1190 chromosome, complete genometransposase5e-0856.6
NC_009921:3384116:3391103339110333924911389Frankia sp. EAN1pec, complete genomeFOG: Transposase-like protein5e-0856.6
NC_015957:5082172:509358450935845093967384Streptomyces violaceusniger Tu 4113 chromosome, complete genometransposase of ISMdi28, IS701 family2e-0754.7
NC_013855:56344:6070460704619961293Azospirillum sp. B510 plasmid pAB510a, complete sequencetransposase4e-0753.5
NC_013854:1277106:1282320128232012836121293Azospirillum sp. B510, complete genometransposase4e-0753.5
NC_009921:3551036:359261535926153593076462Frankia sp. EAN1pec, complete genomehypothetical protein2e-0651.6