Pre_GI: BLASTP Hits

Some Help

Query: NC_003888:7561923:7623285 Streptomyces coelicolor A3(2), complete genome

Start: 7623285, End: 7624064, Length: 780

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:2536255:254178025417802542565786Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein6e-89327
NC_018750:6070260:609443460944346095183750Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein1e-27123
NC_013929:3722867:373553537355353735810276Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein7e-1890.9
NC_003888:7561923:762466476246647625485822Streptomyces coelicolor A3(2), complete genomehypothetical protein5e-1581.6
NC_018750:6070260:609579560957956096613819Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein2e-1479.7
NC_013929:3722867:373273137327313733534804Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-1375.9
NC_003888:7561923:762585776258577626660804Streptomyces coelicolor A3(2), complete genomehypothetical protein3e-1375.5
NC_013929:2536255:253919925391992540002804Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-1273.6
NC_018750:6070260:609664060966406097464825Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein7e-1271.2
NC_013929:2536255:254037625403762541191816Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein8e-1270.9
NC_013929:3722867:373390837339083734669762Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-1168.9
NC_018750:6070260:609125160912516091970720Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein7e-0857.8
NC_013929:3722867:373609137360913736273183Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-0653.9
NC_013929:2536255:253778425377842538530747Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-0653.9