Pre_GI: BLASTP Hits

Some Help

Query: NC_003888:7561923:7609452 Streptomyces coelicolor A3(2), complete genome

Start: 7609452, End: 7610765, Length: 1314

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012483:3731542:3760002376000237612071206Acidobacterium capsulatum ATCC 51196, complete genomehypothetical protein5e-54212
NC_009454:713892:7231987231987244721275Pelotomaculum thermopropionicum SI, complete genomehypothetical protein1e-23111
NC_014834:872924:8801088801088812861179Rhodopseudomonas palustris DX-1 chromosome, complete genomehypothetical protein1e-23110
NC_008554:3055000:3061297306129730625531257Syntrophobacter fumaroxidans MPOB, complete genomehypothetical protein9e-2098.6
NC_011992:1381843:1393732139373213949281197Acidovorax ebreus TPSY, complete genomehypothetical protein1e-1894.4