Pre_GI: BLASTP Hits

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Query: NC_003888:7337453:7370866 Streptomyces coelicolor A3(2), complete genome

Start: 7370866, End: 7372683, Length: 1818

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006510:3321426:3324415332441533261811767Geobacillus kaustophilus HTA426, complete genomehypothetical protein4e-122439
NC_012793:3243727:3259602325960232613681767Geobacillus sp. WCH70, complete genomeprotein of unknown function DUF2628e-122437
NC_012590:637651:6573276573276591891863Corynebacterium aurimucosum ATCC 700975, complete genomehypothetical protein3e-116419
NC_013093:7222000:7222001722200172237821782Actinosynnema mirum DSM 43827, complete genomeprotein of unknown function DUF2624e-114412
NC_013510:2288746:2296096229609622978741779Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF2625e-113409
NC_015856:1:1186311863136861824Collimonas fungivorans Ter331 chromosome, complete genomehypothetical protein2e-110399
NC_014814:859124:8817248817248835651842Mycobacterium sp. Spyr1 chromosome, complete genomehypothetical protein5e-110398
NC_014366:2826575:2829646282964628315201875Gamma proteobacterium HdN1, complete genomehypothetical protein1e-109397
NC_008268:1748635:1770432177043217723961965Rhodococcus sp. RHA1, complete genomehypothetical protein1e-105384
NC_008686:1472899:1497762149776214996841923Paracoccus denitrificans PD1222 chromosome 1, complete sequenceprotein of unknown function DUF2621e-104380
NC_009049:1934398:1942589194258919445141926Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequenceprotein of unknown function DUF2626e-104378
NC_015737:1976000:2009520200952020112981779Clostridium sp. SY8519, complete genomehypothetical protein3e-103376
NC_015437:767572:7756487756487774141767Selenomonas sputigena ATCC 35185 chromosome, complete genomeProtein of unknown function DUF20814e-102372
NC_009720:2489003:2508645250864525105521908Xanthobacter autotrophicus Py2, complete genomehypothetical protein5e-99362
NC_015711:8964410:2452245242901839Myxococcus fulvus HW-1 chromosome, complete genomehypothetical protein5e-99362
NC_020829:1:1442614426162161791Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein5e-92338
NC_015381:4363005:4373886437388643750221137Burkholderia gladioli BSR3 chromosome 1, complete sequence3e-60233
NC_015381:4363005:437180643718064372483678Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein1e-35151
NC_020453:1084238:1133665113366511359232259Agromonas oligotrophica S58 DNA, complete genomehypothetical protein1e-23111
NC_000909:597692:6136646136646154061743Methanocaldococcus jannaschii DSM 2661, complete genomehypothetical protein2e-1998.2
NC_015565:287900:3162553162553179161662Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completehypothetical protein3e-1480.9
NC_009484:857384:8752448752448769111668Acidiphilium cryptum JF-5 chromosome, complete genomehypothetical protein5e-1273.2
NC_010424:825117:8335938335938351611569Candidatus Desulforudis audaxviator MP104C, complete genomeprotein of unknown function DUF2622e-0964.3