Pre_GI: BLASTP Hits

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Query: NC_003888:6103534:6122525 Streptomyces coelicolor A3(2), complete genome

Start: 6122525, End: 6123205, Length: 681

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021177:6127431:614659961465996147351753Streptomyces fulvissimus DSM 40593, complete genomePeptidase7e-31133
NC_014168:1963129:198540219854021986262861Segniliparus rotundus DSM 44985 chromosome, complete genomepeptidase M231e-1583.6
NC_008541:1503835:152493315249331525454522Arthrobacter sp. FB24 chromosome 1, complete sequencepeptidase M23B4e-1374.7
NC_013721:1091901:109385510938551094472618Gardnerella vaginalis 409-05, complete genomepeptidase, M23 family7e-0960.8
NC_016790:1480441:148903114890311489552522Corynebacterium diphtheriae VA01 chromosome, complete genomeputative secreted protein1e-0860.1
NC_016932:1414226:141935514193551419918564Corynebacterium pseudotuberculosis 316 chromosome, complete genomeM23 peptidase domain-containing protein2e-0859.7
NC_016782:1520324:152150415215041522025522Corynebacterium diphtheriae 241 chromosome, complete genomeputative secreted protein1e-0859.7
NC_016786:1519481:152176915217691522290522Corynebacterium diphtheriae HC01 chromosome, complete genomeputative secreted protein1e-0859.7
NC_016788:1509943:151653715165371517058522Corynebacterium diphtheriae HC04 chromosome, complete genomeputative secreted protein2e-0859.3
NC_014329:1407880:143461414346141435312699Corynebacterium pseudotuberculosis FRC41 chromosome, completehypothetical protein2e-0859.3
NC_017031:1420738:143441614344161435114699Corynebacterium pseudotuberculosis P54B96 chromosome, completeM23 peptidase domain-containing protein2e-0859.3
NC_017300:1426975:143197114319711432669699Corynebacterium pseudotuberculosis 1002 chromosome, completeM23 peptidase domain-containing protein2e-0859.3
NC_017303:1420758:143443714344371435135699Corynebacterium pseudotuberculosis I19 chromosome, complete genomeM23 peptidase domain-containing protein2e-0859.3
NC_016781:1408235:143468714346871435250564Corynebacterium pseudotuberculosis 3/99-5 chromosome, completeM23 peptidase domain-containing protein2e-0859.3
NC_017301:1425293:143449414344941435057564Corynebacterium pseudotuberculosis C231 chromosome, completeM23 peptidase domain-containing protein2e-0859.3
NC_016787:1509831:151307215130721513593522Corynebacterium diphtheriae HC03 chromosome, complete genomeputative secreted protein2e-0859.3