Pre_GI: BLASTP Hits

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Query: NC_003888:56225:76895 Streptomyces coelicolor A3(2), complete genome

Start: 76895, End: 77314, Length: 420

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016113:994469:100214910021491002919771Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencetransposase1e-21102
NC_016111:4003290:400930240093024010063762Streptomyces cattleya NRRL 8057, complete genometransposase1e-21102
NC_016111:5369414:537976253797625380523762Streptomyces cattleya NRRL 8057, complete genometransposase1e-21102
NC_016111:4588021:460033546003354601096762Streptomyces cattleya NRRL 8057, complete genometransposase1e-21102
NC_016111:4003290:401832840183284019089762Streptomyces cattleya NRRL 8057, complete genometransposase1e-21102
NC_016111:2651500:266767926676792668440762Streptomyces cattleya NRRL 8057, complete genometransposase1e-21102
NC_016111:2402891:241448224144822415243762Streptomyces cattleya NRRL 8057, complete genometransposase1e-21102
NC_021177:2034722:204939620493962049608213Streptomyces fulvissimus DSM 40593, complete genome1e-1994.7
NC_015957:8677395:868424086842408684827588Streptomyces violaceusniger Tu 4113 chromosome, complete genome6e-1476.3
NC_009142:2565561:257199225719922572687696Saccharopolyspora erythraea NRRL 2338, complete genomePutative transposase1e-1168.6
NC_013093:5419458:542466554246655425444780Actinosynnema mirum DSM 43827, complete genometransposase IS4 family protein9e-1165.5
NC_009921:3666898:367080636708063671294489Frankia sp. EAN1pec, complete genometransposase IS4 family protein1e-1065.1
NC_017186:6395435:646204964620496462804756Amycolatopsis mediterranei S699 chromosome, complete genometransposase IS4 family protein2e-0961.2
NC_009953:3426344:343566834356683436003336Salinispora arenicola CNS-205 chromosome, complete genometransposase IS4 family protein1e-0652