Pre_GI: BLASTP Hits

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Query: NC_003888:56225:72159 Streptomyces coelicolor A3(2), complete genome

Start: 72159, End: 73097, Length: 939

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017955:4075804:4091072409107240924661395Modestobacter marinus, complete genomeADP-ribosyl glycohydrolase family protein8e-63240
NC_012988:1777618:1792042179204217936161575Methylobacterium extorquens DM4, complete genomeADP-ribosyl glycohydrolase8e-1271.2
NC_014410:482193:497506497506498381876Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,ADP-ribosyl-(dinitrogen reductase) hydrolase3e-1169.3
NC_007426:1840670:188086318808631881780918Natronomonas pharaonis DSM 2160, complete genomeprobable ADP-ribosylglycohydrolase7e-0961.6
NC_007794:262402:2724772724772739491473Novosphingobium aromaticivorans DSM 12444, complete genomeADP-ribosyl-(dinitrogen reductase) hydrolase9e-0961.2
NC_014729:1248782:124950612495061250414909Halogeometricum borinquense DSM 11551 chromosome, complete genomeADP-ribosylglycohydrolase1e-0757.8
NC_019792:2524130:258353025835302584438909Natronobacterium gregoryi SP2 chromosome, complete genomeADP-ribosylglycohydrolase3e-0756.2
NC_007604:1586243:161880016188001619696897Synechococcus elongatus PCC 7942, complete genomeADP-ribosylglycohydrolase-like4e-0755.5
NC_010172:5447189:5463619546361954651451527Methylobacterium extorquens PA1, complete genomeADP-ribosylation/Crystallin J15e-0755.5