Pre_GI: BLASTP Hits

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Query: NC_003888:4927170:4959382 Streptomyces coelicolor A3(2), complete genome

Start: 4959382, End: 4959573, Length: 192

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:6526745:653597865359786536160183Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-1272
NC_013929:6526745:653624765362476536432186Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein5e-1269.7
NC_013510:2937530:294541629454162945604189Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3974e-0960.1
NC_013510:2937530:294607029460702946252183Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3975e-0856.2
NC_013510:2937530:294639329463932946584192Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3977e-0855.8
NC_013510:2937530:294574629457462945928183Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3978e-0855.8
NC_013510:3640776:365263036526303652827198Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3972e-0754.7
NC_013510:5394432:542439854243985424592195Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3975e-0753.1
NC_013510:4319296:432970843297084329908201Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3971e-0652
NC_013510:5394432:542460254246025424787186Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3971e-0651.6
NC_013510:5394432:542419654241965424387192Thermomonospora curvata DSM 43183, complete genome1e-0651.6
NC_013510:3117837:314152331415233141714192Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3972e-0651.2
NC_013510:747042:759508759508759696189Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3972e-0650.8
NC_013510:5394432:542399754239975424191195Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3973e-0650.8