Pre_GI: BLASTP Hits

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Query: NC_003888:4750489:4772215 Streptomyces coelicolor A3(2), complete genome

Start: 4772215, End: 4773021, Length: 807

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010162:9311465:931658793165879317582996Sorangium cellulosum 'So ce 56', complete genomeputative transcriptional regulator1e-48192
NC_015953:2603526:261081926108192611727909Streptomyces sp. SirexAA-E chromosome, complete genomeGntR family transcriptional regulator4e-28125
NC_015671:3093596:309531530953153096085771Cellvibrio gilvus ATCC 13127 chromosome, complete genomeregulatory protein TetR2e-26119
NC_016582:5769080:577043057704305771146717Streptomyces bingchenggensis BCW-1 chromosome, complete genomeTetR family transcriptional regulator3e-26119
NC_013947:1537275:154742115474211548170750Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, TetR family1e-25117
NC_016109:327826:332145332145332954810Kitasatospora setae KM-6054, complete genomeputative TetR family transcriptional regulator8e-25114
NC_013947:1537275:155405415540541554905852Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, TetR family2e-21102
NC_013595:3541012:355596035559603556841882Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, GntR family7e-2097.8
NC_019673:8161242:816215981621598162875717Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, TetR family4e-1789
NC_014221:1518583:152696715269671527650684Truepera radiovictrix DSM 17093 chromosome, complete genometranscriptional regulator, TetR family4e-1789
NC_013947:1696671:172178617217861722718933Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, TetR family4e-1788.6
NC_014210:4122514:412595441259544126646693Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, TetR family8e-1787.8
NC_013757:21245:245362453625210675Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, TetR family1e-1687
NC_013595:41245:412454124541949705Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family1e-1686.7
NC_015434:2683631:270247427024742703091618Verrucosispora maris AB-18-032 chromosome, complete genomeTetR family transcriptional regulator7e-1684.3
NC_013929:5850599:586537458653745866114741Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator1e-1583.6
NC_008596:3404832:340867134086713409429759Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, TetR family protein6e-1374.7
NC_002944:99000:104739104739105512774Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein2e-1066.6
NC_003155:622993:634378634378635061684Streptomyces avermitilis MA-4680, complete genomeTetR-family transcriptional regulator2e-1066.6
NC_013757:3717500:373045537304553731231777Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, TetR family1e-0860.5
NC_015656:2565417:258060425806042581263660Frankia symbiont of Datisca glomerata chromosome, complete genomeregulatory protein TetR3e-0859.3
NC_014391:1317957:132412413241241324828705Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeregulatory protein TetR6e-0858.2
NC_008595:5168941:520266052026605203292633Mycobacterium avium 104, complete genometranscriptional regulator, TetR family protein2e-0756.6
NC_008526:74500:104011104011104658648Lactobacillus casei ATCC 334, complete genomeTranscriptional regulator3e-0755.8
NC_014623:4683671:468649946864994687191693Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeTetR family transcriptional regulator2e-0653.1
NC_013131:4473410:449156644915664492117552Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, TetR family3e-0652.8
NC_011725:4944072:494703849470384947586549Bacillus cereus B4264 chromosome, complete genometranscriptional regulator4e-0652
NC_012704:696374:715196715196716023828Corynebacterium kroppenstedtii DSM 44385, complete genometranscriptional regulator, TetR family5e-0652
NC_003888:8594500:861164386116438612263621Streptomyces coelicolor A3(2), complete genometranscriptional regulator7e-0651.2