Pre_GI: BLASTP Hits

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Query: NC_003888:3817000:3823677 Streptomyces coelicolor A3(2), complete genome

Start: 3823677, End: 3824309, Length: 633

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017297:2796000:280996328099632810664702Clostridium botulinum F str. 230613 chromosome, complete genomehypothetical protein5e-26117
NC_010516:2777205:279403827940382794739702Clostridium botulinum B1 str. Okra, complete genomehypothetical protein4e-25114
NC_010520:2807429:282457728245772825278702Clostridium botulinum A3 str. Loch Maree, complete genomehypothetical protein5e-24110
NC_018868:282738:307535307535308170636Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein2e-2099.4
NC_019940:929071:935488935488936132645Thioflavicoccus mobilis 8321 chromosome, complete genomehypothetical protein8e-2097.1
NC_019978:1182056:118679111867911187510720Halobacteroides halobius DSM 5150, complete genomehypothetical protein5e-1994.4
NC_010505:2690939:271502627150262715610585Methylobacterium radiotolerans JCM 2831, complete genomehypothetical protein8e-1890.5
NC_011979:773673:773008773008773697690Geobacter sp. FRC-32, complete genomehypothetical protein4e-1787.8
NC_016745:1472000:148962114896211490247627Oceanimonas sp. GK1 chromosome, complete genomehypothetical protein2e-1685.5
NC_005090:1921154:192518119251811925765585Wolinella succinogenes DSM 1740, complete genomehypothetical protein4e-1684.7
NC_005042:513931:537058537058537702645Prochlorococcus marinus subsp. marinus str. CCMP1375, completehypothetical protein3e-1581.6
NC_017506:1222000:125609612560961256728633Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein4e-1581.3
NC_007963:3574000:359075235907523591369618Chromohalobacter salexigens DSM 3043, complete genomehypothetical protein1e-1479.7
NC_009481:676478:695285695285695926642Synechococcus sp. WH 7803 chromosome, complete genomehypothetical protein3e-1478.6
NC_005125:2456889:247427824742782474910633Gloeobacter violaceus PCC 7421, complete genomehypothetical protein3e-1478.2
NC_021150:3505234:351160235116023512216615Azotobacter vinelandii CA6, complete genomehypothetical protein7e-1477.4
NC_012560:3505235:351160335116033512217615Azotobacter vinelandii DJ, complete genomehypothetical protein7e-1477.4
NC_007335:1820332:184203718420371842768732Prochlorococcus marinus str. NATL2A, complete genomehypothetical protein1e-1170.1
NC_008816:518895:540960540960541571612Prochlorococcus marinus str. AS9601, complete genomehypothetical protein1e-1066.2