Pre_GI: BLASTP Hits

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Query: NC_003888:3138905:3153389 Streptomyces coelicolor A3(2), complete genome

Start: 3153389, End: 3153709, Length: 321

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015953:2640500:265221626522162652536321Streptomyces sp. SirexAA-E chromosome, complete genomesmall multidrug resistance protein4e-35146
NC_016114:4614924:462354046235404623860321Streptomyces flavogriseus ATCC 33331 chromosome, complete genomesmall multidrug resistance protein1e-34145
NC_006510:591339:632275632275632595321Geobacillus kaustophilus HTA426, complete genomechaperone protein4e-1993.2
NC_016845:411844:432140432140432457318Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,quarternary ammonium compound transport protein1e-1788.6
NC_012731:403670:423636423636423953318Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomequarternary ammonium compound transport protein1e-1788.6
NC_009648:4958500:497850649785064978823318Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomequarternary ammonium compound transport protein1e-1788.6
NC_009253:3272000:327410332741033274423321Desulfotomaculum reducens MI-1 chromosome, complete genomesmall multidrug resistance protein1e-1788.2
NC_011283:5170683:517209251720925172409318Klebsiella pneumoniae 342 chromosome, complete genomequaternary ammonium compound-resistance protein SugE2e-1787.4
NC_013850:4993307:499546149954614995778318Klebsiella variicola At-22 chromosome, complete genomesmall multidrug resistance protein2e-1787.4
NC_020181:3518396:352054735205473520864318Enterobacter aerogenes EA1509E, complete genomeQuaternary ammonium compound-resistance protein sugE8e-1785.9
NC_015663:1934863:195033119503311950648318Enterobacter aerogenes KCTC 2190 chromosome, complete genomesmall multidrug resistance protein9e-1785.5
NC_009140:60806:741367413674576441Salmonella enterica enterica sv Newport str. SL254, completequaternary ammonium compound-resistance protein SugE21e-1685.1
NC_009140:60806:677536775368193441Salmonella enterica enterica sv Newport str. SL254, completequaternary ammonium compound-resistance protein SugE11e-1685.1
NC_015658:319296:331326331326331649324Halopiger xanaduensis SH-6 plasmid pHALXA01, complete sequencesmall multidrug resistance protein2e-1684.7
NC_016612:1840325:186020318602031860520318Klebsiella oxytoca KCTC 1686 chromosome, complete genomesmall multidrug resistance protein2e-1684.3
NC_013744:300000:325888325888326223336Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completesmall multidrug resistance protein3e-1684
NC_015954:1662129:167945316794531679776324Halophilic archaeon DL31 chromosome, complete genomesmall multidrug resistance protein2e-1580.9
NC_016626:1825845:185346618534661853777312Burkholderia sp. YI23 plasmid byi_1p, complete sequencesmall multidrug resistance protein9e-1475.5
NC_016631:1757788:176772117677211768053333Granulicella mallensis MP5ACTX8 chromosome, complete genomesmall multidrug resistance protein1e-1271.6
NC_003902:555699:575410575410575724315Xanthomonas campestris pv. campestris str. ATCC 33913, completeSugE protein6e-1269.3
NC_007086:557789:577500577500577814315Xanthomonas campestris pv. campestris str. 8004, complete genomeSugE protein6e-1269.3
NC_016830:3230939:324705332470533247370318Pseudomonas fluorescens F113 chromosome, complete genomeSugE protein6e-1269.3
NC_015379:3736500:374577337457733746090318Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative quaternary ammonium compound-resistance protein6e-1269.3
NC_012660:2045398:204737720473772047691315Pseudomonas fluorescens SBW25 chromosome, complete genomequaternary ammonium compound-resistance protein1e-1168.6
NC_018080:1730534:173289317328931733207315Pseudomonas aeruginosa DK2 chromosome, complete genometransporter2e-1168.2
NC_010511:7024412:705008570500857050405321Methylobacterium sp. 4-46 chromosome, complete genomesmall multidrug resistance protein4e-1063.5
NC_017192:1841987:186150518615051861831327Arcobacter sp. L, complete genomemultidrug resistance protein1e-0962
NC_011894:3090000:309579230957923096112321Methylobacterium nodulans ORS 2060, complete genomesmall multidrug resistance protein2e-0961.2
NC_007712:2806500:285065328506532850973321Sodalis glossinidius str. 'morsitans', complete genomeGroEL supressor protein SugE3e-0960.5
NC_015572:1974000:199254119925411992861321Methylomonas methanica MC09 chromosome, complete genomesmall multidrug resistance protein2e-0857.8
NC_020995:789665:804728804728805048321Enterococcus casseliflavus EC20, complete genomehypothetical protein6e-0856.2
NC_007333:1457000:146525614652561465570315Thermobifida fusca YX, complete genomesmall multidrug resistance protein, SMR family2e-0754.3
NC_015953:4908069:491158149115814911904324Streptomyces sp. SirexAA-E chromosome, complete genomesmall multidrug resistance protein4e-0753.5
NC_002927:1292573:129469312946931295028336Bordetella bronchiseptica RB50, complete genomeputative chaperone9e-0752.4
NC_014550:7560:187161871619033318Arthrobacter arilaitensis Re117, complete genomequaternary ammonium compound-resistance protein SugE3e-0650.8
NC_015690:2039215:206836520683652068679315Paenibacillus mucilaginosus KNP414 chromosome, complete genomeYkkD5e-0650.1
NC_020244:3358399:336421033642103364530321Bacillus subtilis XF-1, complete genomehypothetical protein5e-0650.1