Pre_GI: BLASTP Hits

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Query: NC_003888:3138905:3149938 Streptomyces coelicolor A3(2), complete genome

Start: 3149938, End: 3150744, Length: 807

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016114:4614924:462653946265394627339801Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein1e-78293
NC_015953:2640500:264867526486752649475801Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein1e-75283
NC_010572:5445081:545646054564605457308849Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein5e-72271
NC_016582:8031000:804022280402228041037816Streptomyces bingchenggensis BCW-1 chromosome, complete genomeABC transporter permease3e-68258
NC_019673:8581000:860330486033048604080777Saccharothrix espanaensis DSM 44229 complete genomeABC-type transporter, permease subunit1e-26120
NC_012914:970000:974625974625975419795Paenibacillus sp. JDR-2, complete genomeprotein of unknown function DUF9905e-1065.1
NC_011567:388358:395456395456396301846Anoxybacillus flavithermus WK1, complete genomeABC-type uncharacterized transport system, permease component2e-0859.7
NC_010572:8352462:835464683546468355485840Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-0652.8
NC_011726:3205278:322366232236623224483822Cyanothece sp. PCC 8801, complete genomeprotein of unknown function DUF9904e-0652