Pre_GI: BLASTP Hits

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Query: NC_003888:3138905:3149058 Streptomyces coelicolor A3(2), complete genome

Start: 3149058, End: 3149945, Length: 888

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010572:5445081:545730154573015458188888Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative integral membrane transport protein2e-77288
NC_016114:4614924:462734746273474628204858Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein7e-77287
NC_015953:2640500:264778626477862648682897Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein8e-76283
NC_016582:8031000:804103080410308041911882Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative integral membrane transport protein6e-72270
NC_019673:8581000:860407386040738604870798Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein9e-25114
NC_010572:8352462:835383983538398354639801Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-1375.9
NC_014171:521996:525224525224526009786Bacillus thuringiensis BMB171 chromosome, complete genomeABC transporter permease3e-0756.2
NC_017208:516127:519355519355520140786Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeABC transporter permease3e-0755.8
NC_012914:970000:975426975426976217792Paenibacillus sp. JDR-2, complete genomeprotein of unknown function DUF9907e-0755.1
NC_019897:3467618:349087834908783491606729Thermobacillus composti KWC4 chromosome, complete genomeABC transporter permease2e-0653.1