Pre_GI: BLASTP Hits

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Query: NC_003888:3138905:3142123 Streptomyces coelicolor A3(2), complete genome

Start: 3142123, End: 3142482, Length: 360

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018750:3661243:367329836732983673645348Streptomyces venezuelae ATCC 10712, complete genomeLactoylglutathione lyase2e-41167
NC_014834:959986:965247965247965600354Rhodopseudomonas palustris DX-1 chromosome, complete genomeglyoxalase/bleomycin resistance protein/dioxygenase6e-24109
NC_008095:2031997:203694120369412037294354Myxococcus xanthus DK 1622, complete genomeglyoxylase family protein1e-22104
NC_010515:2358134:238109223810922381442351Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceGlyoxalase/bleomycin resistance protein/dioxygenase3e-1994
NC_016935:4117485:412549641254964125849354Paenibacillus mucilaginosus 3016 chromosome, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase3e-1993.6
NC_014643:1123601:115209711520971152462366Rothia dentocariosa ATCC 17931 chromosome, complete genomeglyoxylase1e-1891.7
NC_007963:2644930:266417326641732664562390Chromohalobacter salexigens DSM 3043, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase4e-1373.2
NC_013093:6511108:652730365273036527713411Actinosynnema mirum DSM 43827, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase2e-0651.2
NC_013510:1:139731397314383411Thermomonospora curvata DSM 43183, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase6e-0649.7