Pre_GI: BLASTP Hits

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Query: NC_003306:22228:27940 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 27940, End: 28194, Length: 255

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012987:32296:5172351723532221500Methylobacterium extorquens DM4 plasmid p1METDI, complete sequencetransposase of ISMdi27, IS21 family (ORF 1)4e-1063.2
NC_007964:328825:3507263507263522251500Nitrobacter hamburgensis X14, complete genomeIntegrase, catalytic region3e-0753.9
NC_011987:362997:384397384397384834438Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequencehypothetical protein2e-0651.6
NC_011386:931140:9487869487869498831098Oligotropha carboxidovorans OM5, complete genomeintegrase, catalytic region2e-0650.8
NC_015684:3157941:3174621317462131756701050Oligotropha carboxidovorans OM5 chromosome, complete genome2e-0650.8
NC_017249:9198000:9199454919945492004581005Bradyrhizobium japonicum USDA 6, complete genometransposase3e-0650.8