Pre_GI: BLASTP Hits

Some Help

Query: NC_003063:304962:333597 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 333597, End: 334283, Length: 687

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010557:316000:325022325022325717696Burkholderia ambifaria MC40-6 chromosome 3, complete sequencehypothetical protein5e-56217
NC_016943:3270308:329369532936953294450756Blastococcus saxobsidens DD2, complete genomehypothetical protein7e-29127
NC_007925:4060635:408192640819264082600675Rhodopseudomonas palustris BisB18, complete genomehypothetical protein3e-22105
NC_010805:575709:591886591886592551666Burkholderia multivorans ATCC 17616 chromosome 2, completehypothetical protein5e-1684.7
NC_010086:1816378:188275318827531883418666Burkholderia multivorans ATCC 17616 chromosome 2, completeconserved hypothetical protein5e-1684.7
NC_009255:1105786:114148311414831142148666Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein5e-1684.7
NC_009255:1105786:115075011507501151439690Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein1e-1583.2
NC_010805:575709:602367602367603056690Burkholderia multivorans ATCC 17616 chromosome 2, completehypothetical protein1e-1583.2
NC_010086:1816378:187224818722481872937690Burkholderia multivorans ATCC 17616 chromosome 2, completeconserved hypothetical protein1e-1583.2
NC_020064:3825916:385016238501623850815654Serratia marcescens FGI94, complete genomehypothetical protein8e-1373.9
NC_014258:42262:795347953480169636Pantoea vagans C9-1 plasmid pPag3, complete sequencehypothetical protein3e-1065.5