Pre_GI: BLASTP Hits

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Query: NC_003063:1358738:1358738 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1358738, End: 1359205, Length: 468

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010581:561579:567399567399567851453Beijerinckia indica subsp. indica ATCC 9039, complete genomeaspartate 1-decarboxylase2e-43174
NC_011894:5751417:576781357678135768271459Methylobacterium nodulans ORS 2060, complete genomeaspartate 1-decarboxylase4e-43173
NS_000195:1257834:127085712708571271213357Candidatus Cloacamonas acidaminovoransAspartate 1-decarboxylase precursor (Aspartate alpha-decarboxylase)1e-1995.5
NC_009662:222964:243227243227243592366Nitratiruptor sp. SB155-2, complete genomeaspartate alpha-decarboxylase4e-1993.6
NC_007575:319119:333933333933334298366Sulfurimonas denitrificans DSM 1251, complete genomeaspartate alpha-decarboxylase1e-1892
NC_005945:1459357:147343114734311473814384Bacillus anthracis str. Sterne, complete genomeaspartate 1-decarboxylase precursor4e-1890.1
NC_007530:1459412:147347714734771473860384Bacillus anthracis str. 'Ames Ancestor', complete genomeaspartate 1-decarboxylase precursor4e-1890.1
NC_014314:576465:576091576091576468378Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeaspartate 1-decarboxylase2e-1788.6
NC_016077:1278104:130015613001561300542387Acidaminococcus intestini RyC-MR95 chromosome, complete genomeaspartate alpha-decarboxylase4e-1787
NC_015555:1989463:199113519911351991488354Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeAspartate 1-decarboxylase4e-1787
NC_015161:758929:782685782685783029345Deinococcus proteolyticus MRP chromosome, complete genomeAspartate 1-decarboxylase3e-1684
NC_017187:387735:407363407363407746384Arcobacter butzleri ED-1, complete genomeaspartate alpha-decarboxylase5e-1683.6
NC_009850:413093:429721429721430104384Arcobacter butzleri RM4018, complete genomeaspartate 1-decarboxylase5e-1683.6
NC_007907:225948:228376228376228759384Desulfitobacterium hafniense Y51, complete genomehypothetical protein6e-1683.2
NC_019903:83857:878778787788260384Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,L-aspartate 1-decarboxylase8e-1682.8
NC_000911:2777447:279493827949382795375438Synechocystis sp. PCC 6803, complete genomeaspartate 1-decarboxylase precursor7e-1682.8
NC_017039:2775275:279276627927662793203438Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeaspartate 1-decarboxylase7e-1682.8
NC_017052:2775263:279275427927542793191438Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeaspartate 1-decarboxylase7e-1682.8
NC_017277:2776264:279375527937552794192438Synechocystis sp. PCC 6803, complete genomeaspartate 1-decarboxylase7e-1682.8
NC_017297:490922:516523516523516906384Clostridium botulinum F str. 230613 chromosome, complete genomeaspartate 1-decarboxylase1e-1582
NC_012563:519037:544467544467544850384Clostridium botulinum A2 str. Kyoto, complete genomeaspartate 1-decarboxylase2e-1581.6
NC_016818:3986570:398918739891873989567381Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeL-aspartate-alpha-decarboxylase2e-1581.6
NC_017047:4037674:404215840421584042538381Rahnella aquatilis HX2 chromosome, complete genomeaspartate alpha-decarboxylase1e-1581.6
NC_010525:285805:311686311686312045360Thermoproteus neutrophilus V24Sta, complete genomeaspartate 1-decarboxylase3e-1580.9
NC_013204:3491441:349926334992633499643381Eggerthella lenta DSM 2243, complete genomeaspartate 1-decarboxylase4e-1580.5
NC_008253:149693:151430151430151810381Escherichia coli 536, complete genomeaspartate 1-decarboxylase precursor5e-1580.1
CU928160:145276:146509146509146889381Escherichia coli IAI1 chromosome, complete genomeaspartate 1-decarboxylase6e-1579.7
NC_000913:144577:146314146314146694381Escherichia coli K12, complete genomeaspartate 1-decarboxylase precursor6e-1579.7
NC_011740:165363:167965167965168345381Escherichia fergusonii ATCC 35469, complete genomeaspartate 1-decarboxylase6e-1579.7
CU928145:143755:146367146367146747381Escherichia coli 55989 chromosome, complete genomeaspartate 1-decarboxylase6e-1579.7
NC_010498:153755:156367156367156747381Escherichia coli SMS-3-5, complete genomeaspartate 1-decarboxylase6e-1579.7
NC_010468:3835259:385288938528893853269381Escherichia coli ATCC 8739, complete genomeaspartate 1-decarboxylase6e-1579.7
AC_000091:144577:146314146314146694381Escherichia coli W3110 DNA, complete genomeaspartate 1-decarboxylase6e-1579.7
CP002516:3949061:396390139639013964281381Escherichia coli KO11, complete genomeaspartate 1-decarboxylase6e-1579.7
CP002185:146389:147622147622148002381Escherichia coli W, complete genomeaspartate 1-decarboxylase6e-1579.7
NC_007946:149733:152345152345152725381Escherichia coli UTI89, complete genomeaspartate 1-decarboxylase6e-1579.7
NC_011748:143755:146367146367146747381Escherichia coli 55989, complete genomeaspartate alpha-decarboxylase6e-1579.7
NC_004431:153907:156519156519156899381Escherichia coli CFT073, complete genomeaspartate 1-decarboxylase precursor6e-1579.7
NC_009801:143426:147732147732148112381Escherichia coli E24377A, complete genomeaspartate 1-decarboxylase6e-1579.7
AP010958:143358:147664147664148044381Escherichia coli O103:H2 str. 12009 DNA, complete genomeaspartate 1-decarboxylase6e-1579.7
NC_010473:118681:120418120418120798381Escherichia coli str. K-12 substr. DH10B, complete genomeaspartate 1-decarboxylase6e-1579.7
NC_016902:3949061:396390139639013964281381Escherichia coli KO11FL chromosome, complete genomeaspartate 1-decarboxylase6e-1579.7
NC_013364:143492:147798147798148178381Escherichia coli O111:H- str. 11128, complete genomeaspartate 1-decarboxylase6e-1579.7
NC_013361:145461:148996148996149376381Escherichia coli O26:H11 str. 11368 chromosome, complete genomeaspartate alpha-decarboxylase6e-1579.7
NC_013353:143358:147664147664148044381Escherichia coli O103:H2 str. 12009, complete genomeaspartate 1-decarboxylase6e-1579.7
NC_012967:145582:149117149117149497381Escherichia coli B str. REL606 chromosome, complete genomeaspartate alpha-decarboxylase6e-1579.7
NC_012947:3619384:363422436342243634604381Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeaspartate alpha-decarboxylase6e-1579.7
NC_012759:144576:146313146313146693381Escherichia coli BW2952 chromosome, complete genomeaspartate alpha-decarboxylase6e-1579.7
NC_011745:149594:152206152206152586381Escherichia coli ED1a chromosome, complete genomeaspartate alpha-decarboxylase6e-1579.7
NC_011742:149732:152344152344152724381Escherichia coli S88 chromosome, complete genomeaspartate alpha-decarboxylase6e-1579.7
NC_011741:145276:146509146509146889381Escherichia coli IAI1 chromosome, complete genomeaspartate alpha-decarboxylase6e-1579.7
NC_011601:149428:152040152040152420381Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeaspartate alpha-decarboxylase6e-1579.7
NC_011415:146397:147630147630148010381Escherichia coli SE11 chromosome, complete genomeaspartate alpha-decarboxylase6e-1579.7
NC_008563:149709:152321152321152701381Escherichia coli APEC O1, complete genomehypothetical protein6e-1579.7
NC_013161:1878700:189845618984561898854399Cyanothece sp. PCC 8802, complete genomeaspartate 1-decarboxylase2e-1478.2
NC_011726:1911500:192862919286291929027399Cyanothece sp. PCC 8801, complete genomeaspartate 1-decarboxylase2e-1478.2
NC_012918:1444333:144604414460441446448405Geobacter sp. M21 chromosome, complete genomeaspartate alpha-decarboxylase2e-1478.2
NC_016885:1732257:173607417360741736427354Pyrobaculum oguniense TE7 chromosome, complete genomeaspartate 1-decarboxylase1e-1375.5
NC_016631:4113794:413507241350724135458387Granulicella mallensis MP5ACTX8 chromosome, complete genomeaspartate 1-decarboxylase1e-1375.5
NC_015510:4251553:425659742565974256947351Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeaspartate 1-decarboxylase2e-1375.1
NC_008599:29000:499054990550252348Campylobacter fetus subsp. fetus 82-40, complete genomeaspartate 1-decarboxylase6e-1373.2
NC_015167:1154497:117505811750581175408351Cellulophaga lytica DSM 7489 chromosome, complete genomeAspartate 1-decarboxylase7e-1373.2
NC_019673:359540:365959365959366474516Saccharothrix espanaensis DSM 44229 complete genomeAspartate 1-decarboxylase2e-1271.6
NC_004463:2262467:226626322662632266616354Bradyrhizobium japonicum USDA 110, complete genomeaspartate 1-decarboxylase precursor2e-1271.2
NC_009715:1877825:187933318793331879680348Campylobacter curvus 525.92 chromosome, complete genomeaspartate alpha-decarboxylase4e-1270.5
NC_017249:7993713:801387880138788014216339Bradyrhizobium japonicum USDA 6, complete genomeaspartate 1-decarboxylase6e-1269.7
NC_012792:707864:725726725726726127402Variovorax paradoxus S110 chromosome 2, complete genomeaspartate 1-decarboxylase6e-1269.7
NC_013223:1188500:119153111915311191911381Desulfohalobium retbaense DSM 5692, complete genomeaspartate 1-decarboxylase1e-1168.9
NC_013159:3858425:387272438727243873221498Saccharomonospora viridis DSM 43017, complete genomeL-aspartate 1-decarboxylase4e-1063.5
NC_015859:3177199:320535732053573205779423Corynebacterium variabile DSM 44702 chromosome, complete genomeaspartate 1-decarboxylase1e-0962.4