Pre_GI: BLASTP Hits

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Query: NC_003063:1019674:1042932 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1042932, End: 1044461, Length: 1530

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008314:1275617:1279152127915212806061455Ralstonia eutropha H16 chromosome 2, complete sequencehypothetical protein3e-123442
NC_009328:2083386:2116515211651521179751461Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein2e-60234
NC_007974:934000:9340229340229355151494Ralstonia metallidurans CH34 chromosome 2, complete sequenceMlrC-like protein5e-45182
NC_015726:3280000:3295071329507132965941524Cupriavidus necator N-1 chromosome 1, complete sequenceMlrC family protein 25e-41169
NC_002678:5060670:5111256511125651128331578Mesorhizobium loti MAFF303099, complete genomehypothetical protein2e-40167
NC_014118:2316000:2329947232994723314371491Burkholderia sp. CCGE1002 chromosome chromosome 2, completeMicrocystin LR degradation protein MlrC-like protein1e-40167
NC_012660:2143376:2186943218694321884511509Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein8e-40165
NC_007355:2039435:2045260204526020469181659Methanosarcina barkeri str. fusaro chromosome 1, complete sequencehypothetical protein1e-37157
NC_002927:2636694:2649010264901026505151506Bordetella bronchiseptica RB50, complete genomehypothetical protein8e-35148
NC_013730:140621:1534701534701550441575Spirosoma linguale DSM 74, complete genomeMicrocystin LR degradation protein MlrC-like protein5e-33142
NC_014640:6745873:6792683679268367941911509Achromobacter xylosoxidans A8 chromosome, complete genomeMlrC family protein 104e-33142
NC_010511:871905:8719058719058733921488Methylobacterium sp. 4-46 chromosome, complete genomeMlrC domain-containing protein9e-31135
NC_014640:5897421:5904038590403859055641527Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein1e-30134
NC_014838:175939:1980441980441994921449Pantoea sp. At-9b plasmid pPAT9B01, complete sequenceMicrocystin LR degradation protein MlrC-like protein1e-30134
NC_019904:334654:3473713473713489571587Echinicola vietnamensis DSM 17526 chromosome, complete genomehypothetical protein2e-30134
NC_013132:6612520:6619230661923066207891560Chitinophaga pinensis DSM 2588, complete genomeputative microcystin LR degradation protein MlrC2e-29130
NC_014376:2766326:2776597277659727780451449Clostridium saccharolyticum WM1 chromosome, complete genomeMicrocystin LR degradation protein MlrC-like protein4e-22106
NC_004459:1:4490449055481059Vibrio vulnificus CMCP6 chromosome I, complete sequencehypothetical protein2e-1171.2