Pre_GI: BLASTP Hits

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Query: NC_003063:1019674:1042347 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1042347, End: 1042919, Length: 573

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008322:1595500:161965716196571620310654Shewanella sp. MR-7, complete genomeprotein of unknown function DUF8869e-27119
NC_008321:1523323:154824915482491548899651Shewanella sp. MR-4, complete genomeprotein of unknown function DUF8861e-25115
NC_011663:1709003:173716517371651737872708Shewanella baltica OS223 chromosome, complete genomehypothetical protein2e-22105
NC_009665:3460906:346515534651553465838684Shewanella baltica OS185 chromosome, complete genomehypothetical protein3e-22104
NC_009997:3583166:358558335855833586296714Shewanella baltica OS195, complete genomeprotein of unknown function DUF8866e-22103
NC_016901:3530248:353398435339843534736753Shewanella baltica OS678 chromosome, complete genomehypothetical protein5e-22103
NC_010694:2492378:250851825085182509060543Erwinia tasmaniensis, complete genomeConserved hypothetical protein YdjR1e-1582.8
NC_017082:5925357:594456759445675945151585Bradyrhizobium sp. S23321, complete genomehypothetical protein2e-1272
NC_020181:929000:929042929042929584543Enterobacter aerogenes EA1509E, complete genomeConserved hypothetical protein (perhaps related to histidine degradation)6e-1270.5
NC_005363:2172444:217531421753142175913600Bdellovibrio bacteriovorus HD100, complete genomehypothetical protein1e-1065.9
NC_006677:1255079:127716712771671277700534Gluconobacter oxydans 621H, complete genomehypothetical protein3e-0858.2