Pre_GI: BLASTP Hits

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Query: NC_003063:1019674:1041286 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1041286, End: 1042308, Length: 1023

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007493:1672163:171367417136741714627954Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequencePredicted hydrolase or acyltransferase (alpha/beta hydrolase)5e-35148
NC_010172:57500:107628107628108626999Methylobacterium extorquens PA1, complete genomealpha/beta hydrolase fold2e-1996.7
NC_010511:2079744:2128759212875921298231065Methylobacterium sp. 4-46 chromosome, complete genomealpha/beta hydrolase fold protein7e-1995.1
NC_011894:3578500:3587156358715635883281173Methylobacterium nodulans ORS 2060, complete genomealpha/beta hydrolase fold protein4e-1892.4
NC_010172:57500:638956389564893999Methylobacterium extorquens PA1, complete genomealpha/beta hydrolase fold7e-1891.7
NC_011757:5742290:576604657660465767044999Methylobacterium chloromethanicum CM4, complete genomealpha/beta hydrolase fold protein7e-1891.7
NC_003911:1791878:184737518473751848322948Silicibacter pomeroyi DSS-3, complete genomeesterase, putative5e-1789
NC_010682:460523:463857463857464813957Ralstonia pickettii 12J chromosome 1, complete sequencealpha/beta hydrolase fold7e-1788.2
NC_010581:3387118:3396603339660333976221020Beijerinckia indica subsp. indica ATCC 9039, complete genomealpha/beta hydrolase fold5e-1582
NC_011757:1553500:156560615656061566541936Methylobacterium chloromethanicum CM4, complete genomealpha/beta hydrolase fold protein9e-1581.3
NC_012988:1817000:1829147182914718301481002Methylobacterium extorquens DM4, complete genomealpha/beta hydrolase2e-1480.5
NC_014160:1124956:113518211351821136162981Thermosphaera aggregans DSM 11486 chromosome, complete genomealpha/beta hydrolase fold protein5e-1065.9
NC_015731:2039317:2044642204464220457061065Nitrosomonas sp. Is79A3 chromosome, complete genomealpha/beta hydrolase fold containing protein6e-0962
NC_015510:1234500:125328112532811254165885Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomealpha/beta hydrolase fold protein8e-0961.6
NC_014828:1795781:1818431181843118194531023Ethanoligenens harbinense YUAN-3 chromosome, complete genomealpha/beta hydrolase fold protein2e-0860.5
NC_003911:4001094:4003568400356840046681101Silicibacter pomeroyi DSS-3, complete genomedihydrolipoamide acetyltransferase7e-0858.5
NC_019771:1356000:137462713746271375505879Anabaena cylindrica PCC 7122, complete genomealpha/beta hydrolase fold protein1e-0757.8
NC_012881:1631436:164713716471371648015879Desulfovibrio salexigens DSM 2638, complete genomealpha/beta hydrolase fold protein1e-0757.4
NC_012883:1283529:130035113003511301280930Thermococcus sibiricus MM 739, complete genomePredicted carboxylesterase, alpha/beta hydrolase superfamily3e-0756.6
NC_010338:4148667:4168341416834141695311191Caulobacter sp. K31, complete genome3-oxoadipate enol-lactonase3e-0756.6
NC_014815:3790050:379364737936473794444798Micromonospora sp. L5 chromosome, complete genomealpha/beta hydrolase fold protein5e-0755.8
NC_016631:2583762:258719225871922587995804Granulicella mallensis MP5ACTX8 chromosome, complete genomealpha/beta hydrolase fold protein5e-0755.5
NC_013757:1438812:146832014683201469150831Geodermatophilus obscurus DSM 43160, complete genomealpha/beta hydrolase fold protein1e-0654.7
NC_009901:2485965:248596524859652486723759Shewanella pealeana ATCC 700345, complete genomealpha/beta hydrolase fold1e-0654.7
NC_012811:1:1670216702217265025Methylobacterium extorquens AM1 megaplasmid, complete sequencehypothetical protein2e-0653.9
NC_007777:3824291:383104338310433831993951Frankia sp. CcI3, complete genomealpha/beta hydrolase fold2e-0653.5
NC_009718:579291:5821335821335838211689Fervidobacterium nodosum Rt17-B1, complete genomeinner-membrane translocator3e-0653.1
NC_015966:2841420:285731328573132858140828Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomealpha/beta hydrolase fold protein3e-0652.8
NC_016948:2033311:204906020490602049878819Mycobacterium intracellulare MOTT-64 chromosome, complete genomenon-heme haloperoxidase5e-0652.4