Pre_GI: BLASTP Hits

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Query: NC_002516:1474000:1474727 Pseudomonas aeruginosa PAO1, complete genome

Start: 1474727, End: 1475467, Length: 741

Host Lineage: Pseudomonas aeruginosa; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is an opportunistic human pathogen. While it rarely infects healthy individuals, immunocompromised patients, like burn victims, AIDS-, cancer- or cystic fibrosis-patients are at increased risk for infection with this environmentally versatile bacteria. It is an important soil bacterium with a complex metabolism capable of degrading polycyclic aromatic hydrocarbons, and producing interesting, biologically active secondary metabolites including quinolones, rhamnolipids, lectins, hydrogen cyanide, and phenazines. Production of these products is likely controlled by complex regulatory networks making Pseudomonas aeruginosa adaptable both to free-living and pathogenic lifestyles. The bacterium is naturally resistant to many antibiotics and disinfectants, which makes it a difficult pathogen to treat.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018691:3525430:353820935382093538730522Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily1e-1273.9
NC_016830:2168523:218617921861792186661483Pseudomonas fluorescens F113 chromosome, complete genomeprotein FpvI1e-1273.6
NC_007492:3655545:367508236750823675633552Pseudomonas fluorescens PfO-1, complete genomeSigma-24 (FecI)1e-1273.6
NC_007005:2191500:221606422160642216600537Pseudomonas syringae pv. syringae B728a, complete genomeRNA polymerase sigma-70 factor2e-1066.2
NC_009937:5033152:503490050349005035424525Azorhizobium caulinodans ORS 571, complete genomeFecI-like protein5e-1064.7
NC_021150:2546000:254610825461082546812705Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family9e-1063.9
NC_012560:2546000:254609625460962546800705Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma factor, FecI family9e-1063.9
NC_014934:869715:876370876370876804435Cellulophaga algicola DSM 14237 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily3e-0962.4
NC_013421:1954915:197163419716341972143510Pectobacterium wasabiae WPP163, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0962
NC_007947:1429165:144176714417671442282516Methylobacillus flagellatus KT, complete genomesigma-24 (FecI-like)6e-0961.2
NC_004757:2657490:265749026574902658047558Nitrosomonas europaea ATCC 19718, complete genomeProbable fecI Specialized sigma subunits of RNA polymerase7e-0961.2
NC_007974:934000:953531953531954031501Ralstonia metallidurans CH34 chromosome 2, complete sequencesigma-24 (FecI-like)1e-0860.5
NC_004663:5194400:520235452023545202908555Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor2e-0859.3
NC_010322:768849:792731792731793237507Pseudomonas putida GB-1 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor4e-0858.5
NC_018691:318662:319603319603320118516Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily7e-0857.8
NC_010510:339879:346474346474347019546Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0857.8
NC_014666:4547873:455305045530504553733684Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0757
NC_014375:1146328:117242311724231172977555Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0757
NC_016609:4152977:416982841698284170394567Niastella koreensis GR20-10 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0755.5
NC_012560:201237:217624217624218127504Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma factor, FecI family4e-0755.1
NC_021150:201237:217624217624218127504Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family4e-0755.1
NC_008027:4889662:489179248917924892286495Pseudomonas entomophila L48, complete genomeRNA polymerase sigma-70 factor, ECF subfamily5e-0755.1
NC_015177:2642368:266242426624242662972549Pedobacter saltans DSM 12145 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0754.7
NC_015563:4093650:409834140983414098964624Delftia sp. Cs1-4 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor8e-0754.3
NC_014666:4547873:455674645567464557366621Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-0754.3
NC_005966:1780468:178413917841391784624486Acinetobacter sp. ADP1, complete genomealternative RNAP sigma factor required for fecA promoter recognition and ferric citrate transport; activated by FecR1e-0653.9
NC_014664:1360524:137481013748101375316507Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0653.5
NC_014640:2693060:269306026930602693566507Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma factor FecI3e-0652.4
NC_014305:97055:100558100558101007450Erwinia billingiae Eb661 plasmid pEB170, complete sequenceECF subfamily RNA polymerase sigma-70 factor4e-0652
NC_009040:43791:618926189262389498Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, completeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0651.2
NC_011958:1121387:114501711450171145514498Rhodobacter sphaeroides KD131 chromosome 2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0651.2
NC_008027:2648560:265202626520262652541516Pseudomonas entomophila L48, complete genomeRNA polymerase sigma-70 factor, ECF subfamily9e-0650.8