Pre_GI: BLASTP Hits

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Query: NC_001263:1378605:1386243 Deinococcus radiodurans R1 chromosome 1, complete sequence

Start: 1386243, End: 1386815, Length: 573

Host Lineage: Deinococcus radiodurans; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: This red-pigmented organism's name means "strange berry that withstands radiation", marking the fact that this organism is one of the most radiation-resistant known. It can tolerate radiation levels at 1000 times the levels that would kill a human and it was originally isolated in 1956 from a can of meat that had been irradiated with X-rays. The resistance to radiation may reflect its resistance to dessication, which also causes DNA damage. This organism may be of use in cleaning up toxic metals found at nuclear weapons production sites due to the radiation resistance. This bacterium is also a highly efficient transformer, and can readily take up exogenous DNA from the environment, which may also aid DNA repair. This organism carries multiple copies of many DNA repair genes, suggesting a robust system for dealing with DNA damage. The recombination system may rely on multiple copies of various repeat elements found throughout the genome.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008010:1:138201382014416597Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetranscriptional regulator, TetR family1e-1789.4
NC_001263:1378605:139018613901861390776591Deinococcus radiodurans R1 chromosome 1, complete sequencetranscriptional regulator, TetR family1e-1272.8
NC_017186:10070795:100871341008713410087790657Amycolatopsis mediterranei S699 chromosome, complete genomeTetR family transcriptional regulator9e-0650.1
NC_014318:10070730:100870691008706910087725657Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator9e-0650.1