Pre_GI: SWBIT SVG BLASTP

Query: NC_008149:2411161 Yersinia pestis Nepal516, complete genome

Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from Nepal. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

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BLASTP Alignment.txt

Subject: NC_014259:3369000 Acinetobacter sp. DR1 chromosome, complete genome

Lineage: Acinetobacter oleivorans; Acinetobacter; Moraxellaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain is capable of degrading paraffin, n-hexadecane, diesel. Acinetobacter sp. DR1 is a diesel degrader Gram-negative bacterium isolated from the soil of rice paddies in Soth Korea. They are found in many different habitats, including soil, water, and sewage, as well as in a variety of foodstuffs. They are also members of the normal microflora of human skin, and have been implicated as a presumed causative or contributory agent of numerous nosocomial (in-hospital) infections, especially those in immunocompromised individuals. Due to their genomic versatility, these bacteria are highly adaptive to treatment with various antibiotic reagents.