Pre_GI: SWBIT SVG BLASTN

Query: NC_004603:230000 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.

- Sequence; - BLASTN hit (Low score = Light, High score = Dark)
- hypothetical protein; - cds: hover for description

BLASTN Alignment.txt

Subject: NC_011566:1639444 Shewanella piezotolerans WP3, complete genome

Lineage: Shewanella piezotolerans; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This species was isolated from deep-sea sediment collected in the west Pacific at a depth of 1914 meters. This organism is able to grow in a pressure range of 0.1 - 50MPa with optimum growth occurring at 20MPa.