Pre_GI: SEQWORD Parameters

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




Query: NC_020054:6111419 Fibrella aestuarina BUZ 2 drat genome

Host Lineage: Fibrella aestuarina; Fibrella; Cytophagaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: The organism was isolated from coastal mud from the North Sea (Fedderwardersiel, Germany). Filamentous marine bacterium.



Query GRV_RV = 6.83811

Lower LimitUpper Limit



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

IslandHost DescriptionGRV_RVNeighboursBLASTN
NC_013364:928486Escherichia coli O111:H- str. 11128, complete genome5.34123NeighboursBLASTN
NC_012658:1405788Clostridium botulinum Ba4 str. 657 chromosome, complete genome5.34132NeighboursBLASTN
NC_014541:1165991Ferrimonas balearica DSM 9799 chromosome, complete genome5.34444NeighboursBLASTN
NC_017059:31564*Rhodospirillum photometricum DSM 122, complete genome5.3468BLASTN
NC_015948:1590297*Haloarcula hispanica ATCC 33960 chromosome chromosome I, complete5.37326NeighboursBLASTN
NC_016902:903241Escherichia coli KO11FL chromosome, complete genome5.37804NeighboursBLASTN
CP002516:903241*Escherichia coli KO11, complete genome5.37804NeighboursBLASTN
AP010958:922937Escherichia coli O103:H2 str. 12009 DNA, complete genome5.37994NeighboursBLASTN
NC_013353:922937Escherichia coli O103:H2 str. 12009, complete genome5.38584NeighboursBLASTN
NC_011415:3217796Escherichia coli SE11 chromosome, complete genome5.39188NeighboursBLASTN
NC_021182:1911088Clostridium pasteurianum BC1, complete genome5.40398NeighboursBLASTN
NC_009801:3175714Escherichia coli E24377A, complete genome5.40605NeighboursBLASTN
NC_010505:1264758Methylobacterium radiotolerans JCM 2831, complete genome5.40724NeighboursBLASTN
NC_014393:92500*Clostridium cellulovorans 743B chromosome, complete genome5.41464NeighboursBLASTN
NC_009617:648000Clostridium beijerinckii NCIMB 8052 chromosome, complete genome5.4234NeighboursBLASTN
NC_015687:1*Clostridium acetobutylicum DSM 1731 chromosome, complete genome5.42944NeighboursBLASTN
NC_020291:552104*Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome5.43304NeighboursBLASTN
NC_003030:1*Clostridium acetobutylicum ATCC 824, complete genome5.43341NeighboursBLASTN
NC_015425:2277570*Clostridium botulinum BKT015925 chromosome, complete genome5.44202NeighboursBLASTN
NC_007677:771168Salinibacter ruber DSM 13855, complete genome5.44255NeighboursBLASTN
NC_010468:1775000Escherichia coli ATCC 8739, complete genome5.46775NeighboursBLASTN
NC_017295:95919*Clostridium acetobutylicum EA 2018 chromosome, complete genome5.46812NeighboursBLASTN
NC_015690:632565*Paenibacillus mucilaginosus KNP414 chromosome, complete genome5.47661NeighboursBLASTN
NC_008463:2017607*Pseudomonas aeruginosa UCBPP-PA14, complete genome5.47809NeighboursBLASTN
NC_013282:2827757Cronobacter turicensis, complete genome5.49344NeighboursBLASTN
NC_012658:1810640Clostridium botulinum Ba4 str. 657 chromosome, complete genome5.51174NeighboursBLASTN
NC_013315:796313Clostridium difficile CD196 chromosome, complete genome5.5134NeighboursBLASTN
NC_014976:759129Bacillus subtilis BSn5 chromosome, complete genome5.52412NeighboursBLASTN
NC_010673:205500*Borrelia hermsii DAH, complete genome5.5393NeighboursBLASTN
NC_013406:6494079Paenibacillus sp. Y412MC10 chromosome, complete genome5.53946NeighboursBLASTN
NC_009617:234782Clostridium beijerinckii NCIMB 8052 chromosome, complete genome5.54673NeighboursBLASTN
NC_014958:557208*Deinococcus maricopensis DSM 21211 chromosome, complete genome5.55246NeighboursBLASTN
NC_008346:1499963*Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete5.55862NeighboursBLASTN
NC_018664:985689*Clostridium acidurici 9a chromosome, complete genome5.56805NeighboursBLASTN
NC_012796:3267569*Desulfovibrio magneticus RS-1, complete genome5.57093NeighboursBLASTN
NC_020291:1*Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome5.58259NeighboursBLASTN
NC_013202:59278Halomicrobium mukohataei DSM 12286, complete genome5.59459NeighboursBLASTN
NC_009089:3998347*Clostridium difficile 630, complete genome5.59768NeighboursBLASTN
NC_012918:3203136Geobacter sp. M21 chromosome, complete genome5.6072NeighboursBLASTN
NC_003366:64908*Clostridium perfringens str. 13, complete genome5.62313NeighboursBLASTN
NC_010674:3581044*Clostridium botulinum B str. Eklund 17B, complete genome5.62479NeighboursBLASTN
NC_014751:946155*Mycoplasma leachii PG50 chromosome, complete genome5.63034NeighboursBLASTN
NC_008570:4594436*Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome5.63674NeighboursBLASTN
NC_020291:6426704Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome5.64326NeighboursBLASTN
NC_017192:2548933*Arcobacter sp. L, complete genome5.64444NeighboursBLASTN
NC_021150:5019887*Azotobacter vinelandii CA6, complete genome5.66291NeighboursBLASTN
NC_014393:1*Clostridium cellulovorans 743B chromosome, complete genome5.66909NeighboursBLASTN
NC_009495:38000*Clostridium botulinum A str. ATCC 3502 chromosome, complete genome5.67038NeighboursBLASTN
NC_015435:825853Metallosphaera cuprina Ar-4 chromosome, complete genome5.67182Neighbours
NC_016816:3333000Pantoea ananatis LMG 5342, complete genome5.67486NeighboursBLASTN
NC_017068:1788235Selenomonas ruminantium subsp. lactilytica TAM6421, complete5.68078NeighboursBLASTN
NC_012560:4201969Azotobacter vinelandii DJ, complete genome5.68348NeighboursBLASTN
NC_009800:2156091Escherichia coli HS, complete genome5.69178NeighboursBLASTN
NC_009792:3665369Citrobacter koseri ATCC BAA-895, complete genome5.70021NeighboursBLASTN
NC_019897:2908971*Thermobacillus composti KWC4 chromosome, complete genome5.70113NeighboursBLASTN
NC_011751:3530954Escherichia coli UMN026 chromosome, complete genome5.71843NeighboursBLASTN
NC_017179:1378875*Clostridium difficile BI1, complete genome5.72821NeighboursBLASTN
NC_013665:1922000Methanocella paludicola SANAE, complete genome5.72949NeighboursBLASTN
NC_009348:1475955Aeromonas salmonicida subsp. salmonicida A449, complete genome5.73237NeighboursBLASTN
NC_003366:332500Clostridium perfringens str. 13, complete genome5.75671NeighboursBLASTN
NC_014618:2139639*Enterobacter cloacae SCF1 chromosome, complete genome5.7618NeighboursBLASTN
NC_013522:991649*Thermanaerovibrio acidaminovorans DSM 6589, complete genome5.7628NeighboursBLASTN
NC_009699:3839575*Clostridium botulinum F str. Langeland chromosome, complete genome5.77027NeighboursBLASTN
NC_005085:4335333Chromobacterium violaceum ATCC 12472, complete genome5.77134NeighboursBLASTN
NC_008820:91967Prochlorococcus marinus str. MIT 9303, complete genome5.78852NeighboursBLASTN
NC_009699:33452*Clostridium botulinum F str. Langeland chromosome, complete genome5.78859NeighboursBLASTN
NC_010511:7553703*Methylobacterium sp. 4-46 chromosome, complete genome5.79981NeighboursBLASTN
NC_016024:1876000Candidatus Chloracidobacterium thermophilum B chromosome chromosome5.80687NeighboursBLASTN
NC_013315:3689422Clostridium difficile CD196 chromosome, complete genome5.81212NeighboursBLASTN
NC_009092:1599526Shewanella loihica PV-4, complete genome5.82606NeighboursBLASTN
NC_015913:35837*Candidatus Arthromitus sp. SFB-mouse-Japan, complete genome5.83789NeighboursBLASTN
NC_017294:71494Candidatus Arthromitus sp. SFB-mouse-Yit, complete genome5.84125NeighboursBLASTN
NC_011748:2324495Escherichia coli 55989, complete genome5.84485NeighboursBLASTN
NC_012796:4075583*Desulfovibrio magneticus RS-1, complete genome5.84605NeighboursBLASTN
CU928145:2324495Escherichia coli 55989 chromosome, complete genome5.84666NeighboursBLASTN
NC_020418:603750*Morganella morganii subsp. morganii KT, complete genome5.84822NeighboursBLASTN
NC_012796:2757500Desulfovibrio magneticus RS-1, complete genome5.84904Neighbours
NC_009617:5545477Clostridium beijerinckii NCIMB 8052 chromosome, complete genome5.85403NeighboursBLASTN
NC_003030:303812*Clostridium acetobutylicum ATCC 824, complete genome5.87106NeighboursBLASTN
NC_014815:2363460*Micromonospora sp. L5 chromosome, complete genome5.88334NeighboursBLASTN
NC_003366:1Clostridium perfringens str. 13, complete genome5.89146NeighboursBLASTN
NC_015687:303810*Clostridium acetobutylicum DSM 1731 chromosome, complete genome5.91524NeighboursBLASTN
NC_017297:33519*Clostridium botulinum F str. 230613 chromosome, complete genome5.92341NeighboursBLASTN
NC_017295:1375180Clostridium acetobutylicum EA 2018 chromosome, complete genome5.92443NeighboursBLASTN
NC_004557:32094*Clostridium tetani E88, complete genome5.93466NeighboursBLASTN
NC_009617:68779*Clostridium beijerinckii NCIMB 8052 chromosome, complete genome5.93601NeighboursBLASTN
NC_010516:42475*Clostridium botulinum B1 str. Okra, complete genome5.96074NeighboursBLASTN
NC_010723:420025*Clostridium botulinum E3 str. Alaska E43, complete genome5.97158NeighboursBLASTN
NC_012563:36000*Clostridium botulinum A2 str. Kyoto, complete genome5.98722NeighboursBLASTN
NC_007929:428743*Lactobacillus salivarius subsp. salivarius UCC118, complete genome5.99004NeighboursBLASTN
NC_011745:2399313*Escherichia coli ED1a chromosome, complete genome5.99048NeighboursBLASTN
NC_009480:99640Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete5.99256NeighboursBLASTN
NC_013315:1370000*Clostridium difficile CD196 chromosome, complete genome5.99391NeighboursBLASTN
NC_009089:1202261*Clostridium difficile 630, complete genome6.01043NeighboursBLASTN
NC_017179:3984000Clostridium difficile BI1, complete genome6.02402NeighboursBLASTN
NC_012796:1645856*Desulfovibrio magneticus RS-1, complete genome6.02723NeighboursBLASTN
NC_011283:1901229*Klebsiella pneumoniae 342 chromosome, complete genome6.02992NeighboursBLASTN
NC_010674:192951*Clostridium botulinum B str. Eklund 17B, complete genome6.04695NeighboursBLASTN
NC_020291:5752099Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome6.06782NeighboursBLASTN
NC_017179:281069Clostridium difficile BI1, complete genome6.07042NeighboursBLASTN
NC_009089:1*Clostridium difficile 630, complete genome6.10833NeighboursBLASTN
NC_010674:426256*Clostridium botulinum B str. Eklund 17B, complete genome6.13215NeighboursBLASTN
NC_013316:3863728*Clostridium difficile R20291, complete genome6.1334NeighboursBLASTN
NC_014328:1*Clostridium ljungdahlii ATCC 49587 chromosome, complete genome6.13785NeighboursBLASTN
NC_007516:124486*Synechococcus sp. CC9605, complete genome6.15021NeighboursBLASTN
NC_012918:1814000*Geobacter sp. M21 chromosome, complete genome6.16961NeighboursBLASTN
NC_008593:2457594*Clostridium novyi NT, complete genome6.18567NeighboursBLASTN
NC_008261:1*Clostridium perfringens ATCC 13124, complete genome6.19931NeighboursBLASTN
NC_004557:2777291*Clostridium tetani E88, complete genome6.22744NeighboursBLASTN
NC_000854:723000Aeropyrum pernix K1, complete genome6.23495NeighboursBLASTN
NC_012660:1804610*Pseudomonas fluorescens SBW25 chromosome, complete genome6.24355NeighboursBLASTN
NC_008148:583030Rubrobacter xylanophilus DSM 9941, complete genome6.25713NeighboursBLASTN
NC_010516:1*Clostridium botulinum B1 str. Okra, complete genome6.26488NeighboursBLASTN
NC_008262:67711*Clostridium perfringens SM101, complete genome6.27274NeighboursBLASTN
NC_007517:1468719*Geobacter metallireducens GS-15, complete genome6.31106NeighboursBLASTN
NC_012658:1*Clostridium botulinum Ba4 str. 657 chromosome, complete genome6.31179NeighboursBLASTN
NC_009698:1*Clostridium botulinum A str. Hall chromosome, complete genome6.31471NeighboursBLASTN
NC_018664:3009166*Clostridium acidurici 9a chromosome, complete genome6.3183NeighboursBLASTN
NC_006177:2883476Symbiobacterium thermophilum IAM 14863, complete genome6.32967NeighboursBLASTN
NC_012563:1*Clostridium botulinum A2 str. Kyoto, complete genome6.33244NeighboursBLASTN
NC_013316:1081044*Clostridium difficile R20291, complete genome6.34259NeighboursBLASTN
NC_017179:446564*Clostridium difficile BI1, complete genome6.37359NeighboursBLASTN
NC_015578:423000Treponema primitia ZAS-2 chromosome, complete genome6.38283NeighboursBLASTN
NC_009697:1*Clostridium botulinum A str. ATCC 19397 chromosome, complete6.40467NeighboursBLASTN
NC_013315:895500Clostridium difficile CD196 chromosome, complete genome6.41021NeighboursBLASTN
NC_015425:1207314Clostridium botulinum BKT015925 chromosome, complete genome6.42731NeighboursBLASTN
NC_013316:4018451*Clostridium difficile R20291, complete genome6.43869NeighboursBLASTN
NC_010674:3674739*Clostridium botulinum B str. Eklund 17B, complete genome6.48929NeighboursBLASTN
NC_009495:1*Clostridium botulinum A str. ATCC 3502 chromosome, complete genome6.49437NeighboursBLASTN
NC_012563:811993Clostridium botulinum A2 str. Kyoto, complete genome6.51848NeighboursBLASTN
NC_009617:4911595Clostridium beijerinckii NCIMB 8052 chromosome, complete genome6.57167NeighboursBLASTN
NC_012796:1049034*Desulfovibrio magneticus RS-1, complete genome6.62004NeighboursBLASTN
NC_013316:1*Clostridium difficile R20291, complete genome6.62937NeighboursBLASTN
NC_001264:28266Deinococcus radiodurans R1 chromosome 2, complete sequence6.66381NeighboursBLASTN
NC_020291:5778999Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome6.67768NeighboursBLASTN
NC_018664:2459994*Clostridium acidurici 9a chromosome, complete genome6.68162NeighboursBLASTN
NC_010520:1*Clostridium botulinum A3 str. Loch Maree, complete genome6.69632NeighboursBLASTN
NC_009699:1*Clostridium botulinum F str. Langeland chromosome, complete genome6.70524NeighboursBLASTN
NC_009089:3142976*Clostridium difficile 630, complete genome6.72351NeighboursBLASTN
NC_017297:1*Clostridium botulinum F str. 230613 chromosome, complete genome6.74057NeighboursBLASTN
NC_015425:2690448*Clostridium botulinum BKT015925 chromosome, complete genome6.74606NeighboursBLASTN
NC_012796:3600630*Desulfovibrio magneticus RS-1, complete genome6.82162NeighboursBLASTN
NC_020054:6111419Fibrella aestuarina BUZ 2 drat genome6.83811NeighboursBLASTN
NC_008261:551513*Clostridium perfringens ATCC 13124, complete genome6.86122NeighboursBLASTN
NC_010723:3395187*Clostridium botulinum E3 str. Alaska E43, complete genome6.90078NeighboursBLASTN
NC_010520:35845*Clostridium botulinum A3 str. Loch Maree, complete genome6.91446NeighboursBLASTN
NC_013316:3056925*Clostridium difficile R20291, complete genome6.92409NeighboursBLASTN
NC_009089:370555*Clostridium difficile 630, complete genome6.93749NeighboursBLASTN
NC_013850:1658010Klebsiella variicola At-22 chromosome, complete genome6.94131NeighboursBLASTN
NC_009617:1278000Clostridium beijerinckii NCIMB 8052 chromosome, complete genome6.99423NeighboursBLASTN
NC_012658:35500*Clostridium botulinum Ba4 str. 657 chromosome, complete genome7.0216NeighboursBLASTN
NC_013316:371953*Clostridium difficile R20291, complete genome7.04072NeighboursBLASTN
NC_013316:120759*Clostridium difficile R20291, complete genome7.06072NeighboursBLASTN
NC_016935:1365463*Paenibacillus mucilaginosus 3016 chromosome, complete genome7.08197NeighboursBLASTN
NC_008593:2020473*Clostridium novyi NT, complete genome7.11818NeighboursBLASTN
NC_015425:2752482*Clostridium botulinum BKT015925 chromosome, complete genome7.14509NeighboursBLASTN
NC_009089:4140764*Clostridium difficile 630, complete genome7.16748NeighboursBLASTN
NC_010674:1*Clostridium botulinum B str. Eklund 17B, complete genome7.19445NeighboursBLASTN
NC_012880:3421500*Dickeya dadantii Ech703, complete genome7.21071NeighboursBLASTN
NC_017179:905347Clostridium difficile BI1, complete genome7.29776NeighboursBLASTN
NC_014219:3254268*Bacillus selenitireducens MLS10 chromosome, complete genome7.31167NeighboursBLASTN
NC_010723:1*Clostridium botulinum E3 str. Alaska E43, complete genome7.62407NeighboursBLASTN
NC_009089:117980*Clostridium difficile 630, complete genome7.64953NeighboursBLASTN
NC_008148:2498000Rubrobacter xylanophilus DSM 9941, complete genome7.66912NeighboursBLASTN
NC_010723:3530000*Clostridium botulinum E3 str. Alaska E43, complete genome7.67516NeighboursBLASTN
NC_012796:77071*Desulfovibrio magneticus RS-1, complete genome7.69565NeighboursBLASTN
NC_020211:2206500Serratia marcescens WW4, complete genome7.71608NeighboursBLASTN
NC_008593:2527064*Clostridium novyi NT, complete genome7.72049NeighboursBLASTN
NC_011365:592256*Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome7.85639BLASTN
NC_015315:1Thermoproteus uzoniensis 768-20 chromosome, complete genome7.99056NeighboursBLASTN
NC_002939:2008304Geobacter sulfurreducens PCA, complete genome8.11703NeighboursBLASTN
NC_009656:2422083Pseudomonas aeruginosa PA7 chromosome, complete genome8.19395NeighboursBLASTN